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9
Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 Chris Lu
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4b0d09683a |
iceberg: read manifest lists that omit the Avro format version (#10475)
* s3tables: read Iceberg manifest lists that omit the Avro format version The Iceberg spec pins the Avro header metadata of manifest files but says nothing about manifest lists, so writers disagree. Java and PyIceberg record "format-version"; DuckDB writes no header metadata at all. iceberg-go reads a missing entry as v1, so every v2 manifest listed in a DuckDB-written list is rejected with manifest file's 'format-version' metadata indicates version 2, but entry from manifest list indicates version 1 and, because v1 has no "content" field, delete manifests silently decode as data manifests. ReadManifestList derives the version from the record schema the writer embedded - v2 added "content" and the sequence numbers, v3 added "first_row_id" - and splices it into the header before handing the bytes to iceberg-go. Lists that already carry the entry, and input that is not a parseable Avro container, go through untouched. * iceberg: parse DuckDB-written manifest lists in maintenance and data preview Every manifest list read - the four maintenance operations and the admin table data preview - went straight to iceberg-go, so tables written by DuckDB failed detection and all of compact, remove_orphans, rewrite_manifests and expire_snapshots before they touched anything. Route them through s3tables.ReadManifestList, which recovers the format version the writer left out of the Avro header. This also restores the manifest content type on those tables: with the list read as v1 every delete manifest looked like a data manifest, which hid deletes from the compaction guard and made the preview report a table with position deletes as having none. |
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Chris Lu
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7b3462be6a |
filer: stop an oversized metadata log flush from wedging the change feed (#10430)
* filer: write the metadata log in pieces a volume server will accept A single oversized metadata event grows the log buffer past the volume server's fileSizeLimitMB, and the flush of that buffer is then rejected forever: the retry loop has no exit, so the blob at the head of the queue blocks every later flush and the metadata feed stalls until restart. Split the flushed buffer into BufferSize pieces, on record boundaries where possible so each piece still decodes on its own, and retry each piece separately so a partial success is not replayed. Log files are already read as a chunk stream, with a whole-file fallback when a chunk does not decode standalone, so a record may cross a piece boundary. * log_buffer: let go of a window array grown for an oversized entry An entry larger than BufferSize grows the window array to 2*size+4, and window arrays cycle through SealBuffer rather than being freed. One such entry therefore leaves every later window carrying its size, and currentSnapshotView allocates a snapshot as wide as the array on each window, so a few KB of metadata keeps paying for it. Drop the array when SealBuffer hands it back. Growth is on demand, so the next oversized entry just reallocates. * iceberg maintenance: store merged data files as chunks, not inline saveFilerFile had no size threshold, so compaction wrote whole merged parquet files -- hundreds of MB -- as Entry.Content. That puts the parquet bytes verbatim in the filer store and sends them through the metadata change log again as one event. Keep manifests and metadata JSON inline, upload anything larger to volume servers in chunks, assigning through the filer so the path's storage rules apply. * filer: follow the file size limit the volume servers report The starting piece size is a constant, so a cluster whose -fileSizeLimitMB is set below it would reject every piece and wedge just the same. The rejection names the limit, so take it from there and re-cut the rest of the flush to fit. Piece the buffer one at a time rather than up front, since the size can change partway through a flush. |
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Chris Lu
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1e1b2bb2f9 |
iceberg maintenance: record file counters on the snapshots it commits (#10420)
A maintenance snapshot carried only its own labels — merged-files, delete-groups and friends — and no summary counters, so every engine that reads a table's size out of the current snapshot summary reported nothing for it: PyIceberg's inspect.snapshots, Trino's $snapshots and Spark's DESCRIBE all read total-records, total-data-files and total-files-size verbatim, and a table lost them the moment compaction touched it. Accumulate the files each operation adds and removes, and render them the way the spec defines: the added-*/removed-* counters from the files themselves, then the totals carried over from the parent snapshot. Carry a total only when the parent recorded it. Iceberg treats a missing total as zero, which turns a compaction replacing two files with one into a negative total-data-files, or a table with millions of rows into total-records: 0. Leaving the field out lets a reader fall back to the manifests instead of believing a made-up number. Compaction also accounts for the delete files it consumes, so a run that folds every delete into the rewritten data reports them as removed. |
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Chris Lu
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b4b0346f95 |
iceberg maintenance: resolve table files from the recorded location (#10418)
The worker assumed every file of a table sits under its catalog path, so loadFileByIcebergPath stripped the scheme off a recorded location and joined the remainder onto /buckets/<bucket>/<ns>/<table>. A table the REST catalog placed elsewhere in the bucket — which is what a client gets whenever the catalog path is already occupied — then resolves to a doubled path: lookup /buckets/lake/source/t/lake/source/t-0cd81bca-.../metadata/snap-.avro so the very first manifest list read fails and the job fails again on every scan interval, indefinitely. Resolve absolute references (s3:// URIs and /buckets paths) from the bucket root and keep relative ones under the table's own directory; the bucket-relative form is now the canonical key everywhere references are compared. That directory comes from the metadata location the catalog stores, so reads, writes and deletes all land where the table's other files are instead of splitting it across two trees. References outside the table's bucket are rejected rather than silently misresolved. Rewritten position-delete files now name their data file by absolute URI, the way the table itself names it, instead of a path relative to the table. |
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Chris Lu
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07c9e0db85 |
iceberg maintenance: write absolute s3:// locations into table metadata (#10363)
The maintenance operations built manifest, manifest-list, data-file and
metadata-log paths with a bare path.Join("metadata", ...), so a single
maintenance run wrote scheme-less relative paths into the new snapshot,
the metadata-log and the table xattr. SeaweedFS reads those back fine
because normalizeIcebergPath accepts both forms, but strict readers
resolve every location through S3FileIO and fail with "Invalid S3 URI,
cannot determine scheme", leaving the whole table unreadable after any
maintenance commit.
Add absoluteIcebergPath, the inverse of normalizeIcebergPath, and apply
it at every site that authors locations: rewrite_manifests, compact,
rewrite_position_delete_files, and the shared commit path. The base is
derived from the bucket and table path since that is where the worker
physically writes, matching the locations the REST catalog generates.
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dependabot[bot]andChris Lu
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36f2ddcaea |
build(deps): bump github.com/apache/iceberg-go from 0.5.0 to 0.6.0 (#10038)
* build(deps): bump github.com/apache/iceberg-go from 0.5.0 to 0.6.0 Bumps [github.com/apache/iceberg-go](https://github.com/apache/iceberg-go) from 0.5.0 to 0.6.0. - [Release notes](https://github.com/apache/iceberg-go/releases) - [Commits](https://github.com/apache/iceberg-go/compare/v0.5.0...v0.6.0) --- updated-dependencies: - dependency-name: github.com/apache/iceberg-go dependency-version: 0.6.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * iceberg: adapt worker to iceberg-go 0.6.0 API Fields() now yields iter.Seq2 (index, value); SortField.SourceID and PartitionField.SourceID are methods backed by SourceIDs; RemoveSnapshots takes a postCommit flag (false here, file cleanup runs through the filer). --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Chris Lu <chris.lu@gmail.com> |
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Chris Lu
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87fdea5330 |
fix(admin): carry filer addresses as ServerAddress in plugin cluster context (#9600)
The plugin cluster context forwarded filers as gRPC-only addresses (host:grpcPort). The admin-script worker stored that in ShellOptions.FilerAddress, whose shell commands re-derive the gRPC port via ToGrpcAddress() and re-add the +10000 offset, dialing a non-existent host:28888. Carry filers in pb.ServerAddress form (host:httpPort.grpcPort) and let each consumer convert when it dials: the admin shell uses it verbatim, while the s3_lifecycle and iceberg workers collapse it to a gRPC address. Rename the proto field filer_grpc_addresses -> filer_addresses so the name matches the content. |
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Chris Lu
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6cab199400 |
fix(iceberg): dial filer gRPC address verbatim in plugin worker (#9527)
* fix(iceberg): dial filer gRPC address verbatim in plugin worker dialFiler was running its address argument through pb.ServerAddress.ToGrpcAddress, whose single-port fallback adds +10000 to any host:port — so when the admin forwards ClusterContext.FilerGrpcAddresses (already host:grpcPort) to the worker, the iceberg handler turns the real gRPC port (e.g. 18888) into a non-existent 28888 and dispatched jobs fail with connection refused. Drop the conversion; the address is already dialable. Tests that produced fake filer addresses in dual-port form now return host:grpcPort to match the new contract. * test(ec): use renamed detection_interval_minutes field The admin_runtime.detection_interval_seconds field was renamed to detection_interval_minutes back in May. This integration test was not updated, so the unknown JSON field was silently ignored and the scheduler fell back to the default detection interval (17 min for erasure_coding), which exceeds the test's 5-minute wait and times out. Switch to detection_interval_minutes: 1 — local run completes in ~120s. |
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Chris Lu
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1f6f473995 |
refactor(worker): co-locate plugin handlers with their task packages (#9301)
* refactor(worker): co-locate plugin handlers with their task packages
Move every per-task plugin handler from weed/plugin/worker/ into the
matching weed/worker/tasks/<name>/ package, so each task owns its
detection, scheduling, execution, and plugin handler in one place.
Step 0 (within pluginworker, no behavior change): extract shared helpers
that previously lived inside individual handler files into dedicated
files and export the ones now consumed across packages.
- activity.go: BuildExecutorActivity, BuildDetectorActivity
- config.go: ReadStringConfig/Double/Int64/Bytes/StringList, MapTaskPriority
- interval.go: ShouldSkipDetectionByInterval
- volume_state.go: VolumeState + consts, FilterMetricsByVolumeState/Location
- collection_filter.go: CollectionFilterMode + consts
- volume_metrics.go: export CollectVolumeMetricsFromMasters,
MasterAddressCandidates, FetchVolumeList
- testing_senders_test.go: shared test stubs
Phase 1: move the per-task plugin handlers (and the iceberg subpackage)
into their task packages.
weed/plugin/worker/vacuum_handler.go -> weed/worker/tasks/vacuum/plugin_handler.go
weed/plugin/worker/ec_balance_handler.go -> weed/worker/tasks/ec_balance/plugin_handler.go
weed/plugin/worker/erasure_coding_handler.go -> weed/worker/tasks/erasure_coding/plugin_handler.go
weed/plugin/worker/volume_balance_handler.go -> weed/worker/tasks/balance/plugin_handler.go
weed/plugin/worker/iceberg/ -> weed/worker/tasks/iceberg/
weed/plugin/worker/handlers/handlers.go now blank-imports all five
task subpackages so their init() registrations fire.
weed/command/mini.go and the worker tests construct the handler with
vacuum.DefaultMaxExecutionConcurrency (the constant moved with the
vacuum handler).
admin_script remains in weed/plugin/worker/ because there is no
underlying weed/worker/tasks/admin_script/ package to merge with.
* refactor(worker): update test/plugin_workers imports for moved handlers
Three handler constructors moved out of pluginworker into their task
packages — update the integration test files in test/plugin_workers/
to import from the new locations:
pluginworker.NewVacuumHandler -> vacuum.NewVacuumHandler
pluginworker.NewVolumeBalanceHandler -> balance.NewVolumeBalanceHandler
pluginworker.NewErasureCodingHandler -> erasure_coding.NewErasureCodingHandler
The pluginworker import is kept where the file still uses
pluginworker.WorkerOptions / pluginworker.JobHandler.
* refactor(worker): update test/s3tables iceberg import path
The iceberg subpackage moved from weed/plugin/worker/iceberg/ to
weed/worker/tasks/iceberg/. test/s3tables/maintenance/maintenance_integration_test.go
still imported the old path, breaking S3 Tables / RisingWave / Trino /
Spark / Iceberg-catalog / STS integration test builds.
Mirrors the OSS-side fix needed by every job in the run that
transitively imports test/s3tables/maintenance.
* chore: gofmt PR-touched files
The S3 Tables Format Check job runs `gofmt -l` over weed/s3api/s3tables
and test/s3tables, then fails if anything is unformatted. Files this
PR moved or modified had import-grouping and trailing-spacing issues
introduced by perl-based renames; reformat them with gofmt -w.
Touched files:
test/plugin_workers/erasure_coding/{detection,execution}_test.go
test/s3tables/maintenance/maintenance_integration_test.go
weed/plugin/worker/handlers/handlers.go
weed/worker/tasks/{balance,ec_balance,erasure_coding,vacuum}/plugin_handler*.go
* refactor(worker): bounds-checked int conversions for plugin config values
CodeQL flagged 18 go/incorrect-integer-conversion warnings on the moved
plugin handler files: results of pluginworker.ReadInt64Config (which
ultimately calls strconv.ParseInt with bit size 64) were being narrowed
to int32/uint32/int without an upper-bound check, so a malicious or
malformed admin/worker config value could overflow the target type.
Add three helpers in weed/plugin/worker/config.go that wrap
ReadInt64Config and clamp out-of-range values back to the caller's
fallback:
ReadInt32Config (math.MinInt32 .. math.MaxInt32)
ReadUint32Config (0 .. math.MaxUint32)
ReadIntConfig (math.MinInt32 .. math.MaxInt32, platform-portable)
Update each flagged call site in the four moved task packages to use
the bounds-checked helper. For protobuf uint32 fields (volume IDs)
the variable type also becomes uint32, removing the trailing
uint32(volumeID) casts and changing the "missing volume_id" check
from `<= 0` to `== 0`.
Touched files:
weed/plugin/worker/config.go
weed/worker/tasks/balance/plugin_handler.go
weed/worker/tasks/erasure_coding/plugin_handler.go
weed/worker/tasks/vacuum/plugin_handler.go
* refactor(worker): use ReadIntConfig for clamped derive-worker-config helpers
CodeQL still flagged three call sites where ReadInt64Config was being
narrowed to int after a value-range clamp (max_concurrent_moves <= 50,
batch_size <= 100, min_server_count >= 2). The clamp is correct but
CodeQL's flow analysis didn't recognize the bound, so it flagged them
as unbounded narrowing.
Switch to ReadIntConfig (already int32-bounded by the helper) for
those three sites, drop the now-redundant int64 intermediate variables.
Also drops the now-unused `> math.MaxInt32` clamp in
ec_balance.deriveECBalanceWorkerConfig (the helper covers it).
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