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* s3tables: read Iceberg manifest lists that omit the Avro format version The Iceberg spec pins the Avro header metadata of manifest files but says nothing about manifest lists, so writers disagree. Java and PyIceberg record "format-version"; DuckDB writes no header metadata at all. iceberg-go reads a missing entry as v1, so every v2 manifest listed in a DuckDB-written list is rejected with manifest file's 'format-version' metadata indicates version 2, but entry from manifest list indicates version 1 and, because v1 has no "content" field, delete manifests silently decode as data manifests. ReadManifestList derives the version from the record schema the writer embedded - v2 added "content" and the sequence numbers, v3 added "first_row_id" - and splices it into the header before handing the bytes to iceberg-go. Lists that already carry the entry, and input that is not a parseable Avro container, go through untouched. * iceberg: parse DuckDB-written manifest lists in maintenance and data preview Every manifest list read - the four maintenance operations and the admin table data preview - went straight to iceberg-go, so tables written by DuckDB failed detection and all of compact, remove_orphans, rewrite_manifests and expire_snapshots before they touched anything. Route them through s3tables.ReadManifestList, which recovers the format version the writer left out of the Avro header. This also restores the manifest content type on those tables: with the list read as v1 every delete manifest looked like a data manifest, which hid deletes from the compaction guard and made the preview report a table with position deletes as having none.
527 lines
15 KiB
Go
527 lines
15 KiB
Go
package iceberg
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import (
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"bytes"
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"context"
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"fmt"
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"path"
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"strings"
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"time"
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"github.com/apache/iceberg-go"
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"github.com/apache/iceberg-go/table"
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"github.com/seaweedfs/seaweedfs/weed/glog"
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"github.com/seaweedfs/seaweedfs/weed/pb/filer_pb"
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"github.com/seaweedfs/seaweedfs/weed/pb/plugin_pb"
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"github.com/seaweedfs/seaweedfs/weed/s3api/s3tables"
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"github.com/seaweedfs/seaweedfs/weed/util/wildcard"
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)
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// tableInfo captures metadata about a table for detection/execution.
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type tableInfo struct {
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BucketName string
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Namespace string
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TableName string
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TablePath string // namespace/tableName
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MetadataFileName string
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Metadata table.Metadata
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}
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// scanTablesForMaintenance enumerates table buckets and their tables,
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// evaluating which ones need maintenance based on metadata thresholds.
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// When limit > 0 the scan stops after collecting limit+1 results so the
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// caller can determine whether more tables remain (HasMore).
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func (h *Handler) scanTablesForMaintenance(
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ctx context.Context,
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filerClient filer_pb.SeaweedFilerClient,
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config Config,
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bucketFilter, namespaceFilter, tableFilter string,
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limit int,
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) ([]tableInfo, error) {
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var tables []tableInfo
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ops, err := parseOperations(config.Operations)
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if err != nil {
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return nil, fmt.Errorf("parse operations: %w", err)
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}
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// Compile wildcard matchers once (nil = match all)
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bucketMatchers := wildcard.CompileWildcardMatchers(bucketFilter)
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nsMatchers := wildcard.CompileWildcardMatchers(namespaceFilter)
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tableMatchers := wildcard.CompileWildcardMatchers(tableFilter)
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bucketsPath := s3tables.TablesPath
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bucketEntries, err := listFilerEntries(ctx, filerClient, bucketsPath, "")
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if err != nil {
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return nil, fmt.Errorf("list buckets: %w", err)
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}
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for _, bucketEntry := range bucketEntries {
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select {
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case <-ctx.Done():
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return tables, ctx.Err()
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default:
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}
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if !bucketEntry.IsDirectory || !s3tables.IsTableBucketEntry(bucketEntry) {
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continue
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}
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bucketName := bucketEntry.Name
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if !wildcard.MatchesAnyWildcard(bucketMatchers, bucketName) {
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continue
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}
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// List namespaces within the bucket
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bucketPath := path.Join(bucketsPath, bucketName)
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nsEntries, err := listFilerEntries(ctx, filerClient, bucketPath, "")
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if err != nil {
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glog.Warningf("iceberg maintenance: failed to list namespaces in bucket %s: %v", bucketName, err)
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continue
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}
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for _, nsEntry := range nsEntries {
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select {
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case <-ctx.Done():
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return tables, ctx.Err()
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default:
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}
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if !nsEntry.IsDirectory {
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continue
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}
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nsName := nsEntry.Name
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if !wildcard.MatchesAnyWildcard(nsMatchers, nsName) {
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continue
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}
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// Skip internal directories
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if strings.HasPrefix(nsName, ".") {
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continue
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}
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// List tables within the namespace
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nsPath := path.Join(bucketPath, nsName)
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tableEntries, err := listFilerEntries(ctx, filerClient, nsPath, "")
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if err != nil {
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glog.Warningf("iceberg maintenance: failed to list tables in %s/%s: %v", bucketName, nsName, err)
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continue
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}
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for _, tableEntry := range tableEntries {
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if !tableEntry.IsDirectory {
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continue
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}
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tblName := tableEntry.Name
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if !wildcard.MatchesAnyWildcard(tableMatchers, tblName) {
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continue
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}
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// Check if this entry has table metadata
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metadataBytes, ok := tableEntry.Extended[s3tables.ExtendedKeyMetadata]
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if !ok || len(metadataBytes) == 0 {
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continue
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}
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tablePath := path.Join(nsName, tblName)
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state, err := parseTableMetadataEnvelope(metadataBytes, bucketName, tablePath)
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if err != nil {
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glog.V(2).Infof("iceberg maintenance: skipping %s/%s/%s: cannot parse iceberg metadata: %v", bucketName, nsName, tblName, err)
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continue
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}
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needsWork, err := h.tableNeedsMaintenance(ctx, filerClient, bucketName, tablePath, state, config, ops)
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if err != nil {
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glog.V(2).Infof("iceberg maintenance: skipping %s/%s/%s: cannot evaluate maintenance need: %v", bucketName, nsName, tblName, err)
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continue
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}
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if needsWork {
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tables = append(tables, tableInfo{
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BucketName: bucketName,
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Namespace: nsName,
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TableName: tblName,
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TablePath: tablePath,
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MetadataFileName: state.MetadataFileName,
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Metadata: state.Metadata,
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})
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if limit > 0 && len(tables) > limit {
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return tables, nil
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}
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}
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}
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}
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}
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return tables, nil
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}
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func normalizeDetectionConfig(config Config) Config {
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config = applyThresholdDefaults(config)
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if config.SnapshotRetentionHours <= 0 {
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config.SnapshotRetentionHours = defaultSnapshotRetentionHours
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}
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if config.MaxSnapshotsToKeep <= 0 {
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config.MaxSnapshotsToKeep = defaultMaxSnapshotsToKeep
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}
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return config
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}
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func (h *Handler) tableNeedsMaintenance(
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ctx context.Context,
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filerClient filer_pb.SeaweedFilerClient,
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bucketName, tablePath string,
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state *tableState,
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config Config,
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ops []string,
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) (bool, error) {
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config = normalizeDetectionConfig(config)
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meta := state.Metadata
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dataPath := state.DataPath
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metadataFileName := state.MetadataFileName
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cachedPlanningIndex := state.PlanningIndex
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var predicate *partitionPredicate
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if strings.TrimSpace(config.Where) != "" {
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needsPredicate := false
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for _, op := range ops {
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if op == "compact" || op == "rewrite_position_delete_files" || op == "rewrite_manifests" {
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needsPredicate = true
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break
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}
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}
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if needsPredicate {
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var err error
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predicate, err = parsePartitionPredicate(config.Where, meta)
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if err != nil {
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return false, err
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}
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}
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}
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_ = predicate // used by rewrite_position_delete_files; planning index handles compact/rewrite_manifests
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// Evaluate the metadata-only expiration check first so large tables do not
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// pay for manifest reads when snapshot expiry already makes them eligible.
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for _, op := range ops {
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if op == "expire_snapshots" && needsMaintenance(meta, config) {
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return true, nil
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}
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}
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var currentManifests []iceberg.ManifestFile
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var manifestsErr error
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var manifestsLoaded bool
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getCurrentManifests := func() ([]iceberg.ManifestFile, error) {
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if manifestsLoaded {
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return currentManifests, manifestsErr
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}
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currentManifests, manifestsErr = loadCurrentManifests(ctx, filerClient, bucketName, dataPath, meta)
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manifestsLoaded = true
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return currentManifests, manifestsErr
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}
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computedPlanningIndexes := make(map[string]*planningIndex)
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planningIndexLoaded := make(map[string]bool)
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planningIndexErrs := make(map[string]error)
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getPlanningIndex := func(op string) (*planningIndex, error) {
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if planningIndexLoaded[op] {
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return computedPlanningIndexes[op], planningIndexErrs[op]
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}
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planningIndexLoaded[op] = true
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manifests, err := getCurrentManifests()
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if err != nil {
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planningIndexErrs[op] = err
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return nil, err
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}
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index, err := buildPlanningIndexFromManifests(ctx, filerClient, bucketName, dataPath, meta, config, []string{op}, manifests)
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if err != nil {
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planningIndexErrs[op] = err
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return nil, err
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}
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computedPlanningIndexes[op] = index
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if index != nil {
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if err := persistPlanningIndex(ctx, filerClient, bucketName, tablePath, index); err != nil {
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glog.V(2).Infof("iceberg maintenance: unable to persist planning index for %s/%s: %v", bucketName, tablePath, err)
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}
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}
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return index, nil
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}
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checkPlanningIndex := func(op string, eligibleFn func(*planningIndex, Config) (bool, bool)) (bool, error) {
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if cachedPlanningIndex != nil && cachedPlanningIndex.matchesSnapshot(meta) {
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if eligible, ok := eligibleFn(cachedPlanningIndex, config); ok {
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return eligible, nil
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}
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}
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index, err := getPlanningIndex(op)
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if err != nil {
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return false, err
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}
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if index == nil {
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return false, nil
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}
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eligible, _ := eligibleFn(index, config)
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return eligible, nil
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}
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var opEvalErrors []string
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planningIndexErrorReported := false
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for _, op := range ops {
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switch op {
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case "expire_snapshots":
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// Handled by the metadata-only check above.
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continue
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case "compact":
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eligible, err := checkPlanningIndex(op, (*planningIndex).compactionEligible)
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if err != nil {
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if !planningIndexErrorReported {
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opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
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planningIndexErrorReported = true
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}
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continue
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}
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if eligible {
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return true, nil
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}
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case "rewrite_position_delete_files":
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manifests, err := getCurrentManifests()
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if err != nil {
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opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
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continue
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}
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eligible, err := hasEligibleDeleteRewrite(ctx, filerClient, bucketName, dataPath, manifests, config, meta, predicate)
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if err != nil {
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opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
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continue
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}
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if eligible {
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return true, nil
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}
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case "rewrite_manifests":
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eligible, err := checkPlanningIndex(op, (*planningIndex).rewriteManifestsEligible)
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if err != nil {
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if !planningIndexErrorReported {
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opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
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planningIndexErrorReported = true
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}
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continue
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}
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if eligible {
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return true, nil
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}
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case "remove_orphans":
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if metadataFileName == "" {
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currentState, err := loadCurrentMetadata(ctx, filerClient, bucketName, tablePath)
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if err != nil {
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opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
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continue
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}
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metadataFileName = currentState.MetadataFileName
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}
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orphanCandidates, err := collectOrphanCandidates(ctx, filerClient, bucketName, dataPath, meta, metadataFileName, config.OrphanOlderThanHours)
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if err != nil {
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opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
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continue
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}
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if len(orphanCandidates) > 0 {
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return true, nil
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}
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}
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}
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if len(opEvalErrors) > 0 {
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return false, fmt.Errorf("evaluate maintenance operations: %s", strings.Join(opEvalErrors, "; "))
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}
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return false, nil
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}
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func metadataFileNameFromLocation(location string) string {
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if location == "" {
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return ""
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}
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name := path.Base(location)
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if name == "." || name == "/" {
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return ""
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}
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return name
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}
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func countDataManifests(manifests []iceberg.ManifestFile) int64 {
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var count int64
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for _, mf := range manifests {
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if mf.ManifestContent() == iceberg.ManifestContentData {
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count++
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}
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}
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return count
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}
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func loadCurrentManifests(
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ctx context.Context,
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filerClient filer_pb.SeaweedFilerClient,
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bucketName, dataPath string,
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meta table.Metadata,
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) ([]iceberg.ManifestFile, error) {
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currentSnap := meta.CurrentSnapshot()
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if currentSnap == nil || currentSnap.ManifestList == "" {
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return nil, nil
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}
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manifestListData, err := loadFileByIcebergPath(ctx, filerClient, bucketName, dataPath, currentSnap.ManifestList)
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if err != nil {
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return nil, fmt.Errorf("read manifest list: %w", err)
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}
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manifests, err := s3tables.ReadManifestList(manifestListData)
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if err != nil {
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return nil, fmt.Errorf("parse manifest list: %w", err)
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}
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return manifests, nil
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}
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func hasEligibleCompaction(
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ctx context.Context,
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filerClient filer_pb.SeaweedFilerClient,
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bucketName, dataPath string,
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manifests []iceberg.ManifestFile,
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config Config,
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meta table.Metadata,
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predicate *partitionPredicate,
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) (bool, error) {
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if len(manifests) == 0 {
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return false, nil
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}
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minInputFiles, err := compactionMinInputFiles(config.MinInputFiles)
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if err != nil {
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return false, err
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}
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var dataManifests []iceberg.ManifestFile
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specIDs := make(map[int32]struct{})
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for _, mf := range manifests {
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if mf.ManifestContent() != iceberg.ManifestContentData {
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continue
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}
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dataManifests = append(dataManifests, mf)
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specIDs[mf.PartitionSpecID()] = struct{}{}
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}
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if len(dataManifests) == 0 {
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return false, nil
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}
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if len(specIDs) > 1 {
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return false, nil
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}
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var allEntries []iceberg.ManifestEntry
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for _, mf := range dataManifests {
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manifestData, err := loadFileByIcebergPath(ctx, filerClient, bucketName, dataPath, mf.FilePath())
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if err != nil {
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return false, fmt.Errorf("read manifest %s: %w", mf.FilePath(), err)
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}
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entries, err := iceberg.ReadManifest(mf, bytes.NewReader(manifestData), true)
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if err != nil {
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return false, fmt.Errorf("parse manifest %s: %w", mf.FilePath(), err)
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}
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allEntries = append(allEntries, entries...)
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}
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candidateEntries := allEntries
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if predicate != nil {
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specsByID := specByID(meta)
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candidateEntries = make([]iceberg.ManifestEntry, 0, len(allEntries))
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for _, entry := range allEntries {
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spec, ok := specsByID[int(entry.DataFile().SpecID())]
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if !ok {
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continue
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}
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match, err := predicate.Matches(spec, entry.DataFile().Partition())
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if err != nil {
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return false, err
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}
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if match {
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candidateEntries = append(candidateEntries, entry)
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}
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}
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}
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rewritePlan, err := resolveCompactionRewritePlan(config, meta)
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if err != nil {
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return false, fmt.Errorf("resolve rewrite strategy: %w", err)
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}
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targetSize := compactionTargetSizeForPlan(config, rewritePlan)
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bins := buildCompactionBins(candidateEntries, targetSize, minInputFiles)
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bins = filterCompactionBinsByPlan(bins, config, rewritePlan)
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return len(bins) > 0, nil
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}
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func compactionMinInputFiles(minInputFiles int64) (int, error) {
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// Ensure the configured value is positive and fits into the platform's int type
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if minInputFiles <= 0 {
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return 0, fmt.Errorf("min input files must be positive, got %d", minInputFiles)
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}
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maxInt := int64(^uint(0) >> 1)
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if minInputFiles > maxInt {
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return 0, fmt.Errorf("min input files %d exceeds platform int size", minInputFiles)
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}
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return int(minInputFiles), nil
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}
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// needsMaintenance checks whether snapshot expiration work is needed based on
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// metadata-only thresholds.
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func needsMaintenance(meta table.Metadata, config Config) bool {
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snapshots := meta.Snapshots()
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if len(snapshots) == 0 {
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return false
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}
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// Check snapshot count
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if int64(len(snapshots)) > config.MaxSnapshotsToKeep {
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return true
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}
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// Check oldest snapshot age
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retentionMs := config.SnapshotRetentionHours * 3600 * 1000
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nowMs := time.Now().UnixMilli()
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for _, snap := range snapshots {
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if nowMs-snap.TimestampMs > retentionMs {
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return true
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}
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}
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return false
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}
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// buildMaintenanceProposal creates a JobProposal for a table needing maintenance.
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func (h *Handler) buildMaintenanceProposal(t tableInfo, filerGrpcAddress, resourceGroup string) *plugin_pb.JobProposal {
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dedupeKey := fmt.Sprintf("iceberg_maintenance:%s/%s/%s", t.BucketName, t.Namespace, t.TableName)
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snapshotCount := len(t.Metadata.Snapshots())
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summary := fmt.Sprintf("Maintain %s/%s/%s (%d snapshots)", t.BucketName, t.Namespace, t.TableName, snapshotCount)
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proposal := &plugin_pb.JobProposal{
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ProposalId: fmt.Sprintf("iceberg-%s-%s-%s-%d", t.BucketName, t.Namespace, t.TableName, time.Now().UnixMilli()),
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DedupeKey: dedupeKey,
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JobType: jobType,
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|
Priority: plugin_pb.JobPriority_JOB_PRIORITY_NORMAL,
|
|
Summary: summary,
|
|
Parameters: map[string]*plugin_pb.ConfigValue{
|
|
"bucket_name": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: t.BucketName}},
|
|
"namespace": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: t.Namespace}},
|
|
"table_name": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: t.TableName}},
|
|
"table_path": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: t.TablePath}},
|
|
"filer_address": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: filerGrpcAddress}},
|
|
},
|
|
Labels: map[string]string{
|
|
"bucket": t.BucketName,
|
|
"namespace": t.Namespace,
|
|
"table": t.TableName,
|
|
},
|
|
}
|
|
if resourceGroup != "" {
|
|
proposal.Parameters["resource_group"] = &plugin_pb.ConfigValue{Kind: &plugin_pb.ConfigValue_StringValue{StringValue: resourceGroup}}
|
|
proposal.Labels["resource_group"] = resourceGroup
|
|
}
|
|
return proposal
|
|
}
|