Files
seaweedfs/weed/worker/tasks/iceberg/detection.go
T
Chris Lu 4b0d09683a iceberg: read manifest lists that omit the Avro format version (#10475)
* s3tables: read Iceberg manifest lists that omit the Avro format version

The Iceberg spec pins the Avro header metadata of manifest files but says
nothing about manifest lists, so writers disagree. Java and PyIceberg record
"format-version"; DuckDB writes no header metadata at all. iceberg-go reads a
missing entry as v1, so every v2 manifest listed in a DuckDB-written list is
rejected with

  manifest file's 'format-version' metadata indicates version 2,
  but entry from manifest list indicates version 1

and, because v1 has no "content" field, delete manifests silently decode as
data manifests.

ReadManifestList derives the version from the record schema the writer
embedded - v2 added "content" and the sequence numbers, v3 added
"first_row_id" - and splices it into the header before handing the bytes to
iceberg-go. Lists that already carry the entry, and input that is not a
parseable Avro container, go through untouched.

* iceberg: parse DuckDB-written manifest lists in maintenance and data preview

Every manifest list read - the four maintenance operations and the admin
table data preview - went straight to iceberg-go, so tables written by DuckDB
failed detection and all of compact, remove_orphans, rewrite_manifests and
expire_snapshots before they touched anything. Route them through
s3tables.ReadManifestList, which recovers the format version the writer left
out of the Avro header.

This also restores the manifest content type on those tables: with the list
read as v1 every delete manifest looked like a data manifest, which hid
deletes from the compaction guard and made the preview report a table with
position deletes as having none.
2026-07-28 16:42:17 -07:00

527 lines
15 KiB
Go

package iceberg
import (
"bytes"
"context"
"fmt"
"path"
"strings"
"time"
"github.com/apache/iceberg-go"
"github.com/apache/iceberg-go/table"
"github.com/seaweedfs/seaweedfs/weed/glog"
"github.com/seaweedfs/seaweedfs/weed/pb/filer_pb"
"github.com/seaweedfs/seaweedfs/weed/pb/plugin_pb"
"github.com/seaweedfs/seaweedfs/weed/s3api/s3tables"
"github.com/seaweedfs/seaweedfs/weed/util/wildcard"
)
// tableInfo captures metadata about a table for detection/execution.
type tableInfo struct {
BucketName string
Namespace string
TableName string
TablePath string // namespace/tableName
MetadataFileName string
Metadata table.Metadata
}
// scanTablesForMaintenance enumerates table buckets and their tables,
// evaluating which ones need maintenance based on metadata thresholds.
// When limit > 0 the scan stops after collecting limit+1 results so the
// caller can determine whether more tables remain (HasMore).
func (h *Handler) scanTablesForMaintenance(
ctx context.Context,
filerClient filer_pb.SeaweedFilerClient,
config Config,
bucketFilter, namespaceFilter, tableFilter string,
limit int,
) ([]tableInfo, error) {
var tables []tableInfo
ops, err := parseOperations(config.Operations)
if err != nil {
return nil, fmt.Errorf("parse operations: %w", err)
}
// Compile wildcard matchers once (nil = match all)
bucketMatchers := wildcard.CompileWildcardMatchers(bucketFilter)
nsMatchers := wildcard.CompileWildcardMatchers(namespaceFilter)
tableMatchers := wildcard.CompileWildcardMatchers(tableFilter)
bucketsPath := s3tables.TablesPath
bucketEntries, err := listFilerEntries(ctx, filerClient, bucketsPath, "")
if err != nil {
return nil, fmt.Errorf("list buckets: %w", err)
}
for _, bucketEntry := range bucketEntries {
select {
case <-ctx.Done():
return tables, ctx.Err()
default:
}
if !bucketEntry.IsDirectory || !s3tables.IsTableBucketEntry(bucketEntry) {
continue
}
bucketName := bucketEntry.Name
if !wildcard.MatchesAnyWildcard(bucketMatchers, bucketName) {
continue
}
// List namespaces within the bucket
bucketPath := path.Join(bucketsPath, bucketName)
nsEntries, err := listFilerEntries(ctx, filerClient, bucketPath, "")
if err != nil {
glog.Warningf("iceberg maintenance: failed to list namespaces in bucket %s: %v", bucketName, err)
continue
}
for _, nsEntry := range nsEntries {
select {
case <-ctx.Done():
return tables, ctx.Err()
default:
}
if !nsEntry.IsDirectory {
continue
}
nsName := nsEntry.Name
if !wildcard.MatchesAnyWildcard(nsMatchers, nsName) {
continue
}
// Skip internal directories
if strings.HasPrefix(nsName, ".") {
continue
}
// List tables within the namespace
nsPath := path.Join(bucketPath, nsName)
tableEntries, err := listFilerEntries(ctx, filerClient, nsPath, "")
if err != nil {
glog.Warningf("iceberg maintenance: failed to list tables in %s/%s: %v", bucketName, nsName, err)
continue
}
for _, tableEntry := range tableEntries {
if !tableEntry.IsDirectory {
continue
}
tblName := tableEntry.Name
if !wildcard.MatchesAnyWildcard(tableMatchers, tblName) {
continue
}
// Check if this entry has table metadata
metadataBytes, ok := tableEntry.Extended[s3tables.ExtendedKeyMetadata]
if !ok || len(metadataBytes) == 0 {
continue
}
tablePath := path.Join(nsName, tblName)
state, err := parseTableMetadataEnvelope(metadataBytes, bucketName, tablePath)
if err != nil {
glog.V(2).Infof("iceberg maintenance: skipping %s/%s/%s: cannot parse iceberg metadata: %v", bucketName, nsName, tblName, err)
continue
}
needsWork, err := h.tableNeedsMaintenance(ctx, filerClient, bucketName, tablePath, state, config, ops)
if err != nil {
glog.V(2).Infof("iceberg maintenance: skipping %s/%s/%s: cannot evaluate maintenance need: %v", bucketName, nsName, tblName, err)
continue
}
if needsWork {
tables = append(tables, tableInfo{
BucketName: bucketName,
Namespace: nsName,
TableName: tblName,
TablePath: tablePath,
MetadataFileName: state.MetadataFileName,
Metadata: state.Metadata,
})
if limit > 0 && len(tables) > limit {
return tables, nil
}
}
}
}
}
return tables, nil
}
func normalizeDetectionConfig(config Config) Config {
config = applyThresholdDefaults(config)
if config.SnapshotRetentionHours <= 0 {
config.SnapshotRetentionHours = defaultSnapshotRetentionHours
}
if config.MaxSnapshotsToKeep <= 0 {
config.MaxSnapshotsToKeep = defaultMaxSnapshotsToKeep
}
return config
}
func (h *Handler) tableNeedsMaintenance(
ctx context.Context,
filerClient filer_pb.SeaweedFilerClient,
bucketName, tablePath string,
state *tableState,
config Config,
ops []string,
) (bool, error) {
config = normalizeDetectionConfig(config)
meta := state.Metadata
dataPath := state.DataPath
metadataFileName := state.MetadataFileName
cachedPlanningIndex := state.PlanningIndex
var predicate *partitionPredicate
if strings.TrimSpace(config.Where) != "" {
needsPredicate := false
for _, op := range ops {
if op == "compact" || op == "rewrite_position_delete_files" || op == "rewrite_manifests" {
needsPredicate = true
break
}
}
if needsPredicate {
var err error
predicate, err = parsePartitionPredicate(config.Where, meta)
if err != nil {
return false, err
}
}
}
_ = predicate // used by rewrite_position_delete_files; planning index handles compact/rewrite_manifests
// Evaluate the metadata-only expiration check first so large tables do not
// pay for manifest reads when snapshot expiry already makes them eligible.
for _, op := range ops {
if op == "expire_snapshots" && needsMaintenance(meta, config) {
return true, nil
}
}
var currentManifests []iceberg.ManifestFile
var manifestsErr error
var manifestsLoaded bool
getCurrentManifests := func() ([]iceberg.ManifestFile, error) {
if manifestsLoaded {
return currentManifests, manifestsErr
}
currentManifests, manifestsErr = loadCurrentManifests(ctx, filerClient, bucketName, dataPath, meta)
manifestsLoaded = true
return currentManifests, manifestsErr
}
computedPlanningIndexes := make(map[string]*planningIndex)
planningIndexLoaded := make(map[string]bool)
planningIndexErrs := make(map[string]error)
getPlanningIndex := func(op string) (*planningIndex, error) {
if planningIndexLoaded[op] {
return computedPlanningIndexes[op], planningIndexErrs[op]
}
planningIndexLoaded[op] = true
manifests, err := getCurrentManifests()
if err != nil {
planningIndexErrs[op] = err
return nil, err
}
index, err := buildPlanningIndexFromManifests(ctx, filerClient, bucketName, dataPath, meta, config, []string{op}, manifests)
if err != nil {
planningIndexErrs[op] = err
return nil, err
}
computedPlanningIndexes[op] = index
if index != nil {
if err := persistPlanningIndex(ctx, filerClient, bucketName, tablePath, index); err != nil {
glog.V(2).Infof("iceberg maintenance: unable to persist planning index for %s/%s: %v", bucketName, tablePath, err)
}
}
return index, nil
}
checkPlanningIndex := func(op string, eligibleFn func(*planningIndex, Config) (bool, bool)) (bool, error) {
if cachedPlanningIndex != nil && cachedPlanningIndex.matchesSnapshot(meta) {
if eligible, ok := eligibleFn(cachedPlanningIndex, config); ok {
return eligible, nil
}
}
index, err := getPlanningIndex(op)
if err != nil {
return false, err
}
if index == nil {
return false, nil
}
eligible, _ := eligibleFn(index, config)
return eligible, nil
}
var opEvalErrors []string
planningIndexErrorReported := false
for _, op := range ops {
switch op {
case "expire_snapshots":
// Handled by the metadata-only check above.
continue
case "compact":
eligible, err := checkPlanningIndex(op, (*planningIndex).compactionEligible)
if err != nil {
if !planningIndexErrorReported {
opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
planningIndexErrorReported = true
}
continue
}
if eligible {
return true, nil
}
case "rewrite_position_delete_files":
manifests, err := getCurrentManifests()
if err != nil {
opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
continue
}
eligible, err := hasEligibleDeleteRewrite(ctx, filerClient, bucketName, dataPath, manifests, config, meta, predicate)
if err != nil {
opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
continue
}
if eligible {
return true, nil
}
case "rewrite_manifests":
eligible, err := checkPlanningIndex(op, (*planningIndex).rewriteManifestsEligible)
if err != nil {
if !planningIndexErrorReported {
opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
planningIndexErrorReported = true
}
continue
}
if eligible {
return true, nil
}
case "remove_orphans":
if metadataFileName == "" {
currentState, err := loadCurrentMetadata(ctx, filerClient, bucketName, tablePath)
if err != nil {
opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
continue
}
metadataFileName = currentState.MetadataFileName
}
orphanCandidates, err := collectOrphanCandidates(ctx, filerClient, bucketName, dataPath, meta, metadataFileName, config.OrphanOlderThanHours)
if err != nil {
opEvalErrors = append(opEvalErrors, fmt.Sprintf("%s: %v", op, err))
continue
}
if len(orphanCandidates) > 0 {
return true, nil
}
}
}
if len(opEvalErrors) > 0 {
return false, fmt.Errorf("evaluate maintenance operations: %s", strings.Join(opEvalErrors, "; "))
}
return false, nil
}
func metadataFileNameFromLocation(location string) string {
if location == "" {
return ""
}
name := path.Base(location)
if name == "." || name == "/" {
return ""
}
return name
}
func countDataManifests(manifests []iceberg.ManifestFile) int64 {
var count int64
for _, mf := range manifests {
if mf.ManifestContent() == iceberg.ManifestContentData {
count++
}
}
return count
}
func loadCurrentManifests(
ctx context.Context,
filerClient filer_pb.SeaweedFilerClient,
bucketName, dataPath string,
meta table.Metadata,
) ([]iceberg.ManifestFile, error) {
currentSnap := meta.CurrentSnapshot()
if currentSnap == nil || currentSnap.ManifestList == "" {
return nil, nil
}
manifestListData, err := loadFileByIcebergPath(ctx, filerClient, bucketName, dataPath, currentSnap.ManifestList)
if err != nil {
return nil, fmt.Errorf("read manifest list: %w", err)
}
manifests, err := s3tables.ReadManifestList(manifestListData)
if err != nil {
return nil, fmt.Errorf("parse manifest list: %w", err)
}
return manifests, nil
}
func hasEligibleCompaction(
ctx context.Context,
filerClient filer_pb.SeaweedFilerClient,
bucketName, dataPath string,
manifests []iceberg.ManifestFile,
config Config,
meta table.Metadata,
predicate *partitionPredicate,
) (bool, error) {
if len(manifests) == 0 {
return false, nil
}
minInputFiles, err := compactionMinInputFiles(config.MinInputFiles)
if err != nil {
return false, err
}
var dataManifests []iceberg.ManifestFile
specIDs := make(map[int32]struct{})
for _, mf := range manifests {
if mf.ManifestContent() != iceberg.ManifestContentData {
continue
}
dataManifests = append(dataManifests, mf)
specIDs[mf.PartitionSpecID()] = struct{}{}
}
if len(dataManifests) == 0 {
return false, nil
}
if len(specIDs) > 1 {
return false, nil
}
var allEntries []iceberg.ManifestEntry
for _, mf := range dataManifests {
manifestData, err := loadFileByIcebergPath(ctx, filerClient, bucketName, dataPath, mf.FilePath())
if err != nil {
return false, fmt.Errorf("read manifest %s: %w", mf.FilePath(), err)
}
entries, err := iceberg.ReadManifest(mf, bytes.NewReader(manifestData), true)
if err != nil {
return false, fmt.Errorf("parse manifest %s: %w", mf.FilePath(), err)
}
allEntries = append(allEntries, entries...)
}
candidateEntries := allEntries
if predicate != nil {
specsByID := specByID(meta)
candidateEntries = make([]iceberg.ManifestEntry, 0, len(allEntries))
for _, entry := range allEntries {
spec, ok := specsByID[int(entry.DataFile().SpecID())]
if !ok {
continue
}
match, err := predicate.Matches(spec, entry.DataFile().Partition())
if err != nil {
return false, err
}
if match {
candidateEntries = append(candidateEntries, entry)
}
}
}
rewritePlan, err := resolveCompactionRewritePlan(config, meta)
if err != nil {
return false, fmt.Errorf("resolve rewrite strategy: %w", err)
}
targetSize := compactionTargetSizeForPlan(config, rewritePlan)
bins := buildCompactionBins(candidateEntries, targetSize, minInputFiles)
bins = filterCompactionBinsByPlan(bins, config, rewritePlan)
return len(bins) > 0, nil
}
func compactionMinInputFiles(minInputFiles int64) (int, error) {
// Ensure the configured value is positive and fits into the platform's int type
if minInputFiles <= 0 {
return 0, fmt.Errorf("min input files must be positive, got %d", minInputFiles)
}
maxInt := int64(^uint(0) >> 1)
if minInputFiles > maxInt {
return 0, fmt.Errorf("min input files %d exceeds platform int size", minInputFiles)
}
return int(minInputFiles), nil
}
// needsMaintenance checks whether snapshot expiration work is needed based on
// metadata-only thresholds.
func needsMaintenance(meta table.Metadata, config Config) bool {
snapshots := meta.Snapshots()
if len(snapshots) == 0 {
return false
}
// Check snapshot count
if int64(len(snapshots)) > config.MaxSnapshotsToKeep {
return true
}
// Check oldest snapshot age
retentionMs := config.SnapshotRetentionHours * 3600 * 1000
nowMs := time.Now().UnixMilli()
for _, snap := range snapshots {
if nowMs-snap.TimestampMs > retentionMs {
return true
}
}
return false
}
// buildMaintenanceProposal creates a JobProposal for a table needing maintenance.
func (h *Handler) buildMaintenanceProposal(t tableInfo, filerGrpcAddress, resourceGroup string) *plugin_pb.JobProposal {
dedupeKey := fmt.Sprintf("iceberg_maintenance:%s/%s/%s", t.BucketName, t.Namespace, t.TableName)
snapshotCount := len(t.Metadata.Snapshots())
summary := fmt.Sprintf("Maintain %s/%s/%s (%d snapshots)", t.BucketName, t.Namespace, t.TableName, snapshotCount)
proposal := &plugin_pb.JobProposal{
ProposalId: fmt.Sprintf("iceberg-%s-%s-%s-%d", t.BucketName, t.Namespace, t.TableName, time.Now().UnixMilli()),
DedupeKey: dedupeKey,
JobType: jobType,
Priority: plugin_pb.JobPriority_JOB_PRIORITY_NORMAL,
Summary: summary,
Parameters: map[string]*plugin_pb.ConfigValue{
"bucket_name": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: t.BucketName}},
"namespace": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: t.Namespace}},
"table_name": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: t.TableName}},
"table_path": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: t.TablePath}},
"filer_address": {Kind: &plugin_pb.ConfigValue_StringValue{StringValue: filerGrpcAddress}},
},
Labels: map[string]string{
"bucket": t.BucketName,
"namespace": t.Namespace,
"table": t.TableName,
},
}
if resourceGroup != "" {
proposal.Parameters["resource_group"] = &plugin_pb.ConfigValue{Kind: &plugin_pb.ConfigValue_StringValue{StringValue: resourceGroup}}
proposal.Labels["resource_group"] = resourceGroup
}
return proposal
}