Files
seaweedfs/weed/worker/tasks/iceberg/filer_io.go
T
Javier de la Torreanduser.email edf2b0f5ee iceberg maintenance: an unreadable parquet file fails the job, not the process (#12188)
* iceberg maintenance: an unreadable parquet file fails the job, not the process

parquet.NewReader panics on any file it cannot open (wrong magic, a
truncated footer, zero bytes), and parquet-go's row decoder panics on a
corrupt page under a valid footer. Maintenance runs in the worker's
goroutines with no recover, so one bad delete or data file in any table
ended the whole process.

- Every parquet open in compaction goes through newParquetReader, which
  opens with parquet.OpenFile and returns the error.
- A panic while decoding a delete file or a data file's rows is recovered
  into an error naming the file (recoverRead/guardRead).
- As a backstop, detection recovers per table and Execute per operation:
  the table is skipped or the operation fails, and the worker keeps
  running.

A failed delete file still fails the table's compaction (no commit), as a
read error did before; a failed data file still skips only its bin.

* iceberg maintenance: test a corrupt page inside a merge fails it naming the file

* iceberg maintenance: assert a skipped bin's files stay in the snapshot

---------

Co-authored-by: user.email <chrislusf@users.noreply.github.com>
2026-10-29 00:10:47 -07:00

626 lines
22 KiB
Go

package iceberg
import (
"bytes"
"context"
"crypto/rand"
"encoding/hex"
"encoding/json"
"errors"
"fmt"
"io"
"net/url"
"path"
"strconv"
"strings"
"sync"
"time"
"github.com/apache/iceberg-go/table"
"github.com/parquet-go/parquet-go"
"github.com/seaweedfs/seaweedfs/weed/filer"
"github.com/seaweedfs/seaweedfs/weed/glog"
"github.com/seaweedfs/seaweedfs/weed/operation"
"github.com/seaweedfs/seaweedfs/weed/pb/filer_pb"
"github.com/seaweedfs/seaweedfs/weed/s3api/s3tables"
"github.com/seaweedfs/seaweedfs/weed/security"
"github.com/seaweedfs/seaweedfs/weed/util"
util_http "github.com/seaweedfs/seaweedfs/weed/util/http"
"google.golang.org/grpc/codes"
"google.golang.org/grpc/status"
)
// filerFileEntry holds a non-directory entry with its full directory path.
type filerFileEntry struct {
Dir string
Entry *filer_pb.Entry
}
var initGlobalHTTPClientOnce sync.Once
type singleFilerClient struct {
client filer_pb.SeaweedFilerClient
}
func (c singleFilerClient) WithFilerClient(_ bool, fn func(filer_pb.SeaweedFilerClient) error) error {
return fn(c.client)
}
func (c singleFilerClient) AdjustedUrl(location *filer_pb.Location) string {
if location == nil {
return ""
}
if location.PublicUrl != "" {
return location.PublicUrl
}
return location.Url
}
func (c singleFilerClient) GetDataCenter() string {
return ""
}
// listFilerEntries lists all entries in a directory.
func listFilerEntries(ctx context.Context, client filer_pb.SeaweedFilerClient, dir, prefix string) ([]*filer_pb.Entry, error) {
var entries []*filer_pb.Entry
var lastFileName string
limit := uint32(10000)
for {
resp, err := client.ListEntries(ctx, &filer_pb.ListEntriesRequest{
Directory: dir,
Prefix: prefix,
StartFromFileName: lastFileName,
InclusiveStartFrom: lastFileName == "",
Limit: limit,
})
if err != nil {
// Treat not-found as empty directory; propagate other errors.
if status.Code(err) == codes.NotFound {
return entries, nil
}
return entries, fmt.Errorf("list entries in %s: %w", dir, err)
}
count := 0
for {
entry, recvErr := resp.Recv()
if recvErr != nil {
if recvErr == io.EOF {
break
}
return entries, fmt.Errorf("recv entry in %s: %w", dir, recvErr)
}
if entry.Entry != nil {
entries = append(entries, entry.Entry)
lastFileName = entry.Entry.Name
count++
}
}
if count < int(limit) {
break
}
}
return entries, nil
}
// walkFilerEntries recursively lists all non-directory entries under dir.
func walkFilerEntries(ctx context.Context, client filer_pb.SeaweedFilerClient, dir string) ([]filerFileEntry, error) {
entries, err := listFilerEntries(ctx, client, dir, "")
if err != nil {
return nil, err
}
var result []filerFileEntry
for _, entry := range entries {
if entry.IsDirectory {
subDir := path.Join(dir, entry.Name)
subEntries, err := walkFilerEntries(ctx, client, subDir)
if err != nil {
glog.V(2).Infof("iceberg maintenance: cannot walk %s: %v", subDir, err)
continue
}
result = append(result, subEntries...)
} else {
result = append(result, filerFileEntry{Dir: dir, Entry: entry})
}
}
return result, nil
}
// loadCurrentMetadata loads and parses the current Iceberg metadata from the table entry's xattr.
func loadCurrentMetadata(ctx context.Context, client filer_pb.SeaweedFilerClient, bucketName, tablePath string) (*tableState, error) {
dir := path.Join(s3tables.TablesPath, bucketName, path.Dir(tablePath))
name := path.Base(tablePath)
resp, err := filer_pb.LookupEntry(ctx, client, &filer_pb.LookupDirectoryEntryRequest{
Directory: dir,
Name: name,
})
if err != nil {
return nil, fmt.Errorf("lookup table entry %s/%s: %w", dir, name, err)
}
if resp == nil || resp.Entry == nil {
return nil, fmt.Errorf("table entry not found: %s/%s", dir, name)
}
metadataBytes, ok := resp.Entry.Extended[s3tables.ExtendedKeyMetadata]
if !ok || len(metadataBytes) == 0 {
return nil, fmt.Errorf("no metadata xattr on table entry %s/%s", dir, name)
}
state, err := parseTableMetadataEnvelope(metadataBytes, bucketName, tablePath)
if err != nil {
return nil, err
}
if err := state.loadMetadata(ctx, client, bucketName); err != nil {
return nil, err
}
// Refuse to rewrite an entry that only looks like an Iceberg table. Every
// operation here rewrites or deletes files under the table location, and a
// foreign format's files are unreferenced by Iceberg metadata by definition.
if !isIcebergTableEntry(resp.Entry.Extended, state.Metadata) {
return nil, fmt.Errorf("entry %s/%s is not an iceberg table", dir, name)
}
return state, nil
}
// metadataFileMaxBytes bounds the chunked read a location-only record may
// trigger: the location comes from the catalog record and can name any file
// in the bucket, not only ones a commit wrote. Inline content is exempt —
// the REST load path accepts it unbounded and the lookup already holds it in
// memory, so refusing it would only strand a table that loads fine.
var metadataFileMaxBytes int64 = 64 << 20
// loadMetadata fills in Metadata for a record that keeps no inline copy: a
// commit that outgrew the request-size limit stores only the metadata file's
// location, so the bytes come from the file it points to.
func (s *tableState) loadMetadata(ctx context.Context, client filer_pb.SeaweedFilerClient, bucketName string) error {
if s.Metadata != nil {
return nil
}
entry, err := lookupFileByIcebergPath(ctx, client, bucketName, s.DataPath, s.MetadataLocation)
if err != nil {
return fmt.Errorf("load metadata file %s: %w", s.MetadataLocation, err)
}
if len(entry.Content) == 0 && len(entry.Chunks) > 0 {
if size := int64(filer.FileSize(entry)); size > metadataFileMaxBytes {
return fmt.Errorf("metadata file %s too large: %d bytes", s.MetadataLocation, size)
}
}
content, err := readEntryContent(ctx, client, entry, s.MetadataLocation)
if err != nil {
return fmt.Errorf("load metadata file %s: %w", s.MetadataLocation, err)
}
meta, err := table.ParseMetadataBytes(content)
if err != nil {
return fmt.Errorf("parse iceberg metadata at %s: %w", s.MetadataLocation, err)
}
s.Metadata = meta
return nil
}
func isFilerNotFound(err error) bool {
return errors.Is(err, filer_pb.ErrNotFound) || status.Code(err) == codes.NotFound
}
// resolveFilerPath returns the filer path that actually holds a referenced
// file: the verbatim spelling first, then the percent-decoded one. Writers
// may record a path with escaped segments while the S3 layer decoded the key
// before storing the object.
func resolveFilerPath(ctx context.Context, client filer_pb.SeaweedFilerClient, bucketName, dataPath, icebergPath string) (string, error) {
_, fullPath, err := lookupResolvedEntry(ctx, client, bucketName, dataPath, icebergPath)
return fullPath, err
}
// lookupResolvedEntry returns the entry and filer path holding an
// Iceberg-style reference under the verbatim-first rule.
func lookupResolvedEntry(ctx context.Context, client filer_pb.SeaweedFilerClient, bucketName, dataPath, icebergPath string) (*filer_pb.Entry, string, error) {
fullPath, err := icebergFilerPath(bucketName, dataPath, icebergPath)
if err != nil {
return nil, "", err
}
resp, err := filer_pb.LookupEntry(ctx, client, &filer_pb.LookupDirectoryEntryRequest{
Directory: path.Dir(fullPath),
Name: path.Base(fullPath),
})
if err == nil {
return resp.Entry, fullPath, nil
}
if !isFilerNotFound(err) {
return nil, "", err
}
if decoded, decErr := url.PathUnescape(icebergPath); decErr == nil && decoded != icebergPath {
return lookupResolvedEntry(ctx, client, bucketName, dataPath, decoded)
}
return nil, "", err
}
// addFilerPathSpellings records every filer path lookupResolvedEntry can
// return for a reference: each successive decoding of the reference, with the
// rest of the path left verbatim. An extra spelling only keeps a file; a
// missing one can drop a referenced file.
func addFilerPathSpellings(set map[string]struct{}, bucketName, dataPath, icebergPath string) {
for spelling := icebergPath; ; {
filerPath, err := icebergFilerPath(bucketName, dataPath, spelling)
if err != nil {
return
}
set[filerPath] = struct{}{}
decoded, err := url.PathUnescape(spelling)
if err != nil || decoded == spelling {
return
}
spelling = decoded
}
}
// lookupFileByIcebergPath returns the filer entry holding an Iceberg-style
// path. dataPath is the bucket-relative directory the table's files live in.
func lookupFileByIcebergPath(ctx context.Context, client filer_pb.SeaweedFilerClient, bucketName, dataPath, icebergPath string) (*filer_pb.Entry, error) {
entry, _, err := lookupResolvedEntry(ctx, client, bucketName, dataPath, icebergPath)
return entry, err
}
// loadFileByIcebergPath loads a file from the filer given an Iceberg-style path.
func loadFileByIcebergPath(ctx context.Context, client filer_pb.SeaweedFilerClient, bucketName, dataPath, icebergPath string) ([]byte, error) {
entry, err := lookupFileByIcebergPath(ctx, client, bucketName, dataPath, icebergPath)
if err != nil {
return nil, err
}
return readEntryContent(ctx, client, entry, icebergPath)
}
// readEntryContent returns an entry's bytes: its inline content, or a chunked
// file read through the volume servers.
func readEntryContent(ctx context.Context, client filer_pb.SeaweedFilerClient, entry *filer_pb.Entry, name string) ([]byte, error) {
if len(entry.Content) > 0 || len(entry.Chunks) == 0 {
return entry.Content, nil
}
initGlobalHTTPClientOnce.Do(util_http.InitGlobalHttpClient)
reader := filer.NewFileReader(singleFilerClient{client: client}, entry)
if closer, ok := reader.(io.Closer); ok {
defer closer.Close()
}
data, err := io.ReadAll(reader)
if err != nil {
return nil, fmt.Errorf("read chunked file %s: %w", name, err)
}
return data, nil
}
// parquetSchemaByIcebergPath reads a file's parquet schema from its footer,
// so the file's body is never fetched: a chunked file's ReadAt pulls only the
// chunks the footer spans.
func parquetSchemaByIcebergPath(ctx context.Context, client filer_pb.SeaweedFilerClient, bucketName, dataPath, icebergPath string) (*parquet.Schema, error) {
entry, err := lookupFileByIcebergPath(ctx, client, bucketName, dataPath, icebergPath)
if err != nil {
return nil, err
}
var readerAt io.ReaderAt
size := int64(entry.GetAttributes().GetFileSize())
if len(entry.Content) > 0 || len(entry.Chunks) == 0 {
readerAt = bytes.NewReader(entry.Content)
size = int64(len(entry.Content))
} else {
initGlobalHTTPClientOnce.Do(util_http.InitGlobalHttpClient)
reader := filer.NewChunkStreamReader(singleFilerClient{client: client}, entry.Chunks)
defer reader.Close()
readerAt = reader
if size <= 0 {
if size, err = reader.Seek(0, io.SeekEnd); err != nil {
return nil, fmt.Errorf("size of %s: %w", icebergPath, err)
}
}
}
f, err := parquet.OpenFile(readerAt, size)
if err != nil {
return nil, fmt.Errorf("open parquet file %s: %w", icebergPath, err)
}
return f.Schema(), nil
}
// newParquetReader opens data as a parquet file. parquet.NewReader panics on
// a file it cannot open (wrong magic, a truncated footer, zero bytes);
// parquet.OpenFile returns the same failures as errors, and NewReader on the
// opened file does not open it again.
func newParquetReader(data []byte, name string) (*parquet.Reader, error) {
f, err := parquet.OpenFile(bytes.NewReader(data), int64(len(data)))
if err != nil {
return nil, fmt.Errorf("open parquet file %s: %w", name, err)
}
return parquet.NewReader(f), nil
}
// normalizeIcebergPath converts an Iceberg path (an S3 URL, an absolute filer
// path, or a path relative to the table root) into a path relative to the
// bucket root, e.g. "ns/table/metadata/snap-1.avro". Absolute references are
// resolved from the bucket root rather than from dataPath: an Iceberg table
// records where its files actually are, and a client writing through the REST
// catalog may place them outside the catalog path. The bucket-relative form is
// the canonical key for comparing references that mix both spellings.
func normalizeIcebergPath(icebergPath, bucketName, dataPath string) (string, error) {
p := icebergPath
absolute := false
if idx := strings.Index(p, "://"); idx >= 0 {
p = p[idx+3:]
absolute = true
} else if strings.HasPrefix(p, "/") {
absolute = true
}
p = strings.TrimPrefix(p, "/")
if absolute {
rest, ok := cutPathPrefix(p, bucketName)
if !ok {
// Filer-style references carry the /buckets prefix ahead of the bucket.
if withoutTablesPath, hasTablesPath := cutPathPrefix(p, strings.TrimPrefix(s3tables.TablesPath, "/")); hasTablesPath {
rest, ok = cutPathPrefix(withoutTablesPath, bucketName)
}
}
if !ok {
return "", fmt.Errorf("iceberg path %q is outside bucket %q", icebergPath, bucketName)
}
p = rest
} else {
if clean := path.Clean(p); clean == ".." || strings.HasPrefix(clean, "../") {
return "", fmt.Errorf("invalid iceberg path %q", icebergPath)
}
p = path.Join(dataPath, p)
}
p = path.Clean(p)
if p == "." || p == ".." || strings.HasPrefix(p, "../") {
return "", fmt.Errorf("invalid iceberg path %q", icebergPath)
}
return p, nil
}
// cutPathPrefix removes a leading path prefix at a path boundary.
func cutPathPrefix(p, segment string) (string, bool) {
if segment == "" {
return p, false
}
rest, ok := strings.CutPrefix(p, segment+"/")
return rest, ok
}
// icebergFilerPath resolves an Iceberg path to the filer path holding the file.
func icebergFilerPath(bucketName, dataPath, icebergPath string) (string, error) {
relPath, err := normalizeIcebergPath(icebergPath, bucketName, dataPath)
if err != nil {
return "", err
}
return path.Join(s3tables.TablesPath, bucketName, relPath), nil
}
// absoluteIcebergPath is the inverse of normalizeIcebergPath: it builds the
// absolute s3:// URI for a bucket-relative path. The Iceberg spec requires
// absolute locations in metadata — strict readers (Spark/Trino via S3FileIO)
// reject paths with no scheme.
func absoluteIcebergPath(bucketName string, elem ...string) string {
return "s3://" + path.Join(append([]string{bucketName}, elem...)...)
}
const (
// inlineContentLimit is the most saveFilerFile keeps in Entry.Content.
// Manifests and metadata JSON are small and stay inline; a compacted data
// file runs to hundreds of MB, and inlining that stores the parquet bytes
// verbatim in the filer store and ships them again through the metadata
// change log as one oversized event.
inlineContentLimit = 256 * 1024
// filerFileChunkSize is the upload chunk size for anything over the limit.
filerFileChunkSize = 8 * 1024 * 1024
)
// saveFilerFile saves a file to the filer, inline when it is small and as
// volume chunks when it is not.
func saveFilerFile(ctx context.Context, client filer_pb.SeaweedFilerClient, dir, fileName string, content []byte) error {
entry := &filer_pb.Entry{
Name: fileName,
Attributes: &filer_pb.FuseAttributes{
Mtime: time.Now().Unix(),
Crtime: time.Now().Unix(),
FileMode: uint32(0644),
FileSize: uint64(len(content)),
},
}
if len(content) <= inlineContentLimit {
entry.Content = content
} else {
chunks, err := uploadFilerChunks(ctx, client, path.Join(dir, fileName), content)
if err != nil {
return fmt.Errorf("upload %s/%s: %w", dir, fileName, err)
}
entry.Chunks = chunks
}
resp, err := client.CreateEntry(ctx, &filer_pb.CreateEntryRequest{
Directory: dir,
Entry: entry,
})
if err != nil {
return fmt.Errorf("create entry %s/%s: %w", dir, fileName, err)
}
if resp.Error != "" {
return fmt.Errorf("create entry %s/%s: %s", dir, fileName, resp.Error)
}
return nil
}
// uploadFilerChunks writes content to volume servers, assigning through the
// filer so the entry's storage rules apply.
func uploadFilerChunks(ctx context.Context, client filer_pb.SeaweedFilerClient, fullPath string, content []byte) ([]*filer_pb.FileChunk, error) {
assignFn := func(ctx context.Context, count int, expectedDataSize uint64) (*operation.VolumeAssignRequest, *operation.AssignResult, error) {
resp, err := client.AssignVolume(ctx, &filer_pb.AssignVolumeRequest{
Count: int32(count),
Path: fullPath,
ExpectedDataSize: expectedDataSize,
})
if err != nil {
return nil, nil, err
}
if resp.Error != "" {
return nil, nil, errors.New(resp.Error)
}
if resp.Location == nil || resp.FileId == "" {
return nil, nil, fmt.Errorf("assign volume returned no location")
}
return nil, &operation.AssignResult{
Fid: resp.FileId,
Url: resp.Location.Url,
PublicUrl: resp.Location.PublicUrl,
Count: uint64(count),
Auth: security.EncodedJwt(resp.Auth),
Fsync: resp.Fsync,
}, nil
}
initGlobalHTTPClientOnce.Do(util_http.InitGlobalHttpClient)
result, err := operation.UploadReaderInChunks(ctx, util.NewBytesReader(content), &operation.ChunkedUploadOption{
ChunkSize: filerFileChunkSize,
AssignFunc: assignFn,
})
if err != nil {
// Chunks uploaded before the failure are orphaned: nothing references
// them, so name them for fsck rather than losing them silently.
if result != nil {
for _, chunk := range result.FileChunks {
glog.Warningf("iceberg: orphan chunk %s from failed upload of %s", chunk.GetFileIdString(), fullPath)
}
}
return nil, err
}
return result.FileChunks, nil
}
// deleteFilerFile deletes a file from the filer.
func deleteFilerFile(ctx context.Context, client filer_pb.SeaweedFilerClient, dir, fileName string) error {
return filer_pb.DoRemove(ctx, client, dir, fileName, true, false, true, false, nil)
}
// updateTableMetadataXattr updates the table entry's metadata xattr with
// the new Iceberg metadata. It verifies the stored metadataVersion before
// writing and passes the previous metadata xattr back to the filer as a
// server-side precondition so concurrent writers fail with a retryable
// metadata version conflict.
// newMetadataLocation is the absolute location of the new metadata file
// (e.g. "s3://bucket/ns/table/metadata/v3.metadata.json"), matching the form
// the S3 Tables catalog stores.
func updateTableMetadataXattr(ctx context.Context, client filer_pb.SeaweedFilerClient, tableDir string, expectedVersion int, newFullMetadata []byte, newMetadataLocation string) error {
tableName := path.Base(tableDir)
parentDir := path.Dir(tableDir)
resp, err := filer_pb.LookupEntry(ctx, client, &filer_pb.LookupDirectoryEntryRequest{
Directory: parentDir,
Name: tableName,
})
if err != nil {
return fmt.Errorf("lookup table entry: %w", err)
}
if resp == nil || resp.Entry == nil {
return fmt.Errorf("table entry not found")
}
existingXattr, ok := resp.Entry.Extended[s3tables.ExtendedKeyMetadata]
if !ok {
return fmt.Errorf("no metadata xattr on table entry")
}
// Parse existing xattr, update fullMetadata
var internalMeta map[string]json.RawMessage
if err := json.Unmarshal(existingXattr, &internalMeta); err != nil {
return fmt.Errorf("unmarshal existing xattr: %w", err)
}
// Verify the stored metadataVersion matches what we expect before issuing
// the conditional UpdateEntry request below.
versionRaw, ok := internalMeta["metadataVersion"]
if !ok {
return fmt.Errorf("%w: metadataVersion field missing from xattr", errMetadataVersionConflict)
}
var storedVersion int
if err := json.Unmarshal(versionRaw, &storedVersion); err != nil {
return fmt.Errorf("%w: cannot parse metadataVersion: %v", errMetadataVersionConflict, err)
}
if storedVersion != expectedVersion {
return fmt.Errorf("%w: expected version %d, found %d", errMetadataVersionConflict, expectedVersion, storedVersion)
}
// Update the metadata.fullMetadata field
var metadataObj map[string]json.RawMessage
if raw, ok := internalMeta["metadata"]; ok {
if err := json.Unmarshal(raw, &metadataObj); err != nil {
return fmt.Errorf("unmarshal metadata object: %w", err)
}
} else {
metadataObj = make(map[string]json.RawMessage)
}
metadataObj["fullMetadata"] = newFullMetadata
metadataJSON, err := json.Marshal(metadataObj)
if err != nil {
return fmt.Errorf("marshal metadata object: %w", err)
}
internalMeta["metadata"] = metadataJSON
// Increment version
newVersion := expectedVersion + 1
versionJSON, _ := json.Marshal(newVersion)
internalMeta["metadataVersion"] = versionJSON
// Update modifiedAt
modifiedAt, _ := json.Marshal(time.Now().Format(time.RFC3339Nano))
internalMeta["modifiedAt"] = modifiedAt
// Update metadataLocation to point to the new metadata file
metaLocJSON, _ := json.Marshal(newMetadataLocation)
internalMeta["metadataLocation"] = metaLocJSON
// Regenerate versionToken for consistency with the S3 Tables catalog
tokenJSON, _ := json.Marshal(generateIcebergVersionToken())
internalMeta["versionToken"] = tokenJSON
updatedXattr, err := json.Marshal(internalMeta)
if err != nil {
return fmt.Errorf("marshal updated xattr: %w", err)
}
// Assert the whole attribute set, not just the version: this rewrites the
// entry from the snapshot above, so a narrower precondition would delete an
// attribute a concurrent writer created, such as a maintenance configuration.
expectedExtended := s3tables.SnapshotExtended(resp.Entry.Extended)
resp.Entry.Extended[s3tables.ExtendedKeyMetadata] = updatedXattr
resp.Entry.Extended[s3tables.ExtendedKeyMetadataVersion] = metadataVersionXattr(newVersion)
_, err = client.UpdateEntry(ctx, &filer_pb.UpdateEntryRequest{
Directory: parentDir,
Entry: resp.Entry,
ExpectedExtended: expectedExtended,
})
if err != nil {
if status.Code(err) == codes.FailedPrecondition {
return fmt.Errorf("%w: table metadata changed during update", errMetadataVersionConflict)
}
return fmt.Errorf("update table entry: %w", err)
}
return nil
}
func metadataVersionXattr(version int) []byte {
return []byte(strconv.Itoa(version))
}
// generateIcebergVersionToken produces a random hex token, mirroring the
// logic in s3tables.generateVersionToken (which is unexported).
func generateIcebergVersionToken() string {
b := make([]byte, 16)
if _, err := rand.Read(b); err != nil {
return fmt.Sprintf("%x", time.Now().UnixNano())
}
return hex.EncodeToString(b)
}