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Orphan cleanup built its referenced set from snapshot manifests plus the current and previous metadata files, then walked all of metadata/ and data/. Table statistics (Puffin) and partition statistics files are listed in the table metadata's statistics and partition-statistics lists, not in any snapshot, so once they passed the safety window remove_orphans deleted them while the metadata still pointed at them. Mark the files in both lists referenced as well. Generated with [Devin](https://devin.ai) Co-authored-by: Devin <158243242+devin-ai-integration[bot]@users.noreply.github.com>