Commit Graph
16 Commits
Author SHA1 Message Date
Jaehoon KimandClaude Fable 5 c17aebeecf fix(filer.backup): prevent silent backup data loss on transient not-found (#10295)
* fix(filer.backup): stop silently dropping events on transient not-found

Under a write burst, filer.backup could consume a metadata event (advancing
the persisted offset) without replicating the file, with no error logged:

1. filersink CreateEntry/UpdateEntry swallowed replicateChunks errors
   (glog.Warningf + return nil), so the offset advanced past entries that
   were never written.
2. The manifest-chunk branch of replicateChunks resolved via LookupFileId
   with no retry, unlike the data-chunk branch — transient lookup races
   dropped exactly the large manifest-backed files while small
   inline-content siblings landed.
3. isIgnorable404 matched "LookupFileId" / "volume id ... not found",
   misclassifying those races as genuine source 404s at the backup layer.

Fix: on a replicateChunks failure the filer sink now skips only when the
live source has moved past the replayed version (deleted or strictly-newer
mtime) — lossless, a later event carries the current content — and
propagates otherwise so the event is retried. The manifest resolve retries
transient errors like the data-chunk path. isIgnorable404 is narrowed to
genuine 404s; non-filer sinks and the initial-snapshot walk, which relied
on the broad match as their only lossless-skip valve, now make the same
live-source decision (filersink.SourceSupersedes) instead of retrying
forever on a permanently gone volume.

Tests cover propagation of unconfirmed lookup failures, the narrowed 404
classification, and the supersession guards.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(filer.backup): derive supersession path with directory fallback

eventSourceSuperseded built the source path from NewParentPath alone.
Legacy metadata events (persisted by older filers) carry an empty
NewParentPath, so the probe looked up "/<name>", read the miss as
"source gone", and skipped a live file on a transient lookup error —
the silent drop this change is meant to eliminate.

Derive the path via MetadataEventTargetFullPath (the same directory
fallback genProcessFunction uses) and cover both event shapes with
TestEventSupersessionProbe_PathDerivation.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(filersink): retry manifest resolve only for transient errors, bounded when unverifiable

The manifest-resolve retry stopped only when hasSourceNewerVersion proved
the source moved past the replayed version, which wedged the sink in two
cases: incremental sinks use dated target keys that cannot map back to a
source path (supersession never provable), and permanent resolve errors
(corrupt manifest data, bad file ids) fail forever while the source entry
stays live.

Gate the retry instead: keep retrying only transient errors (volume-lookup
races, network interruptions), stop after a few attempts when supersession
cannot be checked, and propagate everything else immediately so the
configured metadata error policy applies (-disableErrorRetry included).
Propagation is lossless: filer.backup's fallback decides with the event's
real source key, and both filer.backup and filer.sync re-deliver the event
(RetryForeverOnError) without advancing the offset.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

* fix(filer.backup): make error classifiers nil-safe

isIgnorable404, isSourceLookupError, and isTransientResolveError called
err.Error() without a nil guard. All current call sites pass a non-nil
error, but the guard is free and matches isRetryableNetworkError.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-10 01:47:46 -07:00
Jaehoon KimandChris Lu ebeab4b6ec feat(filer.sync.verify): reclassify chunk-slice-order ETag diffs as CHUNK_REORDER (#10177)
* feat(filer.sync.verify): reclassify chunk-slice-order ETag diffs as CHUNK_REORDER

filer.ETagChunks concatenates per-chunk MD5s in stored slice order without
normalising by offset, so byte-identical content written by two different paths
(S3 multipart part-completion order on the source vs filer.backup replication
arrival order on the destination) yields different file ETags. filer.sync.verify
reported these as ETAG_MISMATCH even though the files are equal.

Add a second-pass check on every ETAG_MISMATCH: when both sides derive their ETag
from chunks (no attr.Md5) and hold a manifest-free, non-overlapping chunk set
that, once sorted by offset, matches element-wise on (offset, size, ETag),
classify the file as CHUNK_REORDER. Such files are content-equal, so they are
not counted as errors and do not affect the exit code; they are listed only at
higher verbosity (weed -v=1), while the summary always shows their count.

The check stays conservative: a stored attr.Md5 (order-independent content
hash), a differing chunk count, an overlapping/duplicate offset (whose visible
bytes are resolved by timestamp), or a manifest chunk all remain ETAG_MISMATCH.

* filer.sync.verify: decline chunk-reorder fast path on empty per-chunk ETag

An empty or undecodable per-chunk ETag is not a content fingerprint, so
element-wise (offset, size, ETag) equality can't prove the bytes match.
Treating "" == "" as content-equal could reclassify a genuine divergence as
CHUNK_REORDER and drop it from the error count. Decline such chunk sets so they
stay ETAG_MISMATCH.

* filer.sync.verify: emit CHUNK_REORDER in JSON output regardless of -v

The -v=1 gate belongs to the human text report only. Applying it before the
jsonOutput branch dropped the per-file CHUNK_REORDER records from NDJSON while
the summary still counted them, so a machine consumer saw a non-zero count with
no records to reconcile it. Gate the text path only; JSON always emits.

---------

Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-07-01 10:38:21 -07:00
Jaehoon KimandClaude Opus 4.8 a11d81b21f fix(filer.backup): repair chunk-incomplete and stale destination entries (#10082)
* fix(filer.backup): repair chunk-incomplete and stale destination entries

filer.backup left destinations diverged while metadata advanced — chunk-incomplete
(missing/gapped ranges at full attr.file_size) or holding a chunk superseded by a
missed overwrite. The skip/repair decision keyed on filer.FileSize (the attr),
which a truncated entry keeps full, so it never repaired.

Decide from actual chunk state instead:
- coversReference: range-by-range containment (scalar byte totals and attr
  FileSize/Md5 cannot see chunk-level gaps).
- hasStaleBackupChunk: a backup-written chunk (SourceFileId) the source no longer
  lists; ignores out-of-band (rsync/direct) chunks.
- destinationMatchesReference: allocation-free positional fast path gating the
  above so they run only on divergence (the in-sync path stays cheap).
- A strictly-newer destination is never repaired, so an older out-of-order replay
  cannot roll it back. The stale signal is deferred at equal mtime (same-second
  versions cannot be ordered; reliable S3 sub-second ordering is a separate fix).

Tests in filer_sink_test.go.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* filer.backup: verify chunk range in destinationMatchesReference fast path

The allocation-free fast path matched a destination chunk to its reference
by SourceFileId alone. That is correct today only because replicateOneChunk
copies the source chunk's Offset/Size verbatim, so SourceFileId identity
implies an identical range — an invariant that lives in another file with no
guard linking the two. If replication ever re-chunks (split/coalesce), a
chunk with the right SourceFileId but a different range would fast-path as a
full match and skip a needed repair (a false positive in the very class this
change otherwise prevents).

Compare Offset/Size alongside SourceFileId so the fast path is self-contained
and can only be more conservative (a range mismatch falls through to the
precise coversReference/hasStaleBackupChunk checks). Add tests for a shifted
offset and a larger size at matching identity.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-24 14:23:38 -07:00
20e4614fc6 feat(mount): attach Content-MD5 to chunk uploads (#10016)
* mount: attach Content-MD5 to chunk uploads

Mount writes never set UploadOption.Md5, so FileChunk.ETag stays empty
and filer.ETag() degenerates to md5("")-N: same-size files compare
equal regardless of content, defeating metadata-level verification
like filer.sync.verify.

Compute each chunk's MD5 and send it as Content-MD5. The volume server
verifies it on ingest (rejecting in-flight corruption) and echoes it
back, persisting FileChunk.ETag like filer/S3 writes already do.

The dirty-page flush paths already pass a *util.BytesReader whose
backing slice is the whole chunk, so the digest is taken in place with
no extra read, copy, or allocation (UploadWithRetry unwraps it the same
way downstream). Only the rarer plain-reader callers (e.g. manifest
chunks) fall back to io.ReadAll. Skipped under -cipher, where only the
ciphertext reaches the server.

The digest encoding (std-base64 of the raw md5) is the contract the
volume server verifies against, so it is factored into contentMD5Base64
and covered by a unit test.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* mount: compute chunk Content-MD5 in the uploader, not the caller

Move the WantMd5 hashing into UploadWithRetry, where the chunk is already
buffered for the retry path, so saveDataAsChunk stops type-switching the
reader and re-reading plain readers. One materialization point, and the
cipher exclusion lives next to the hash instead of at every call site.

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-06-19 10:29:28 -07:00
18868e5204 fix(mount): run entry invalidations off the meta-cache apply loop (#10002)
* fix(mount): run entry invalidations off the meta-cache apply loop

The apply loop ran invalidateFunc inline, which acquires the open file
handle's lock in fhLockTable. Meanwhile flushMetadataToFiler holds that
same fh lock and then waits on the apply loop (applyLocalMetadataEvent).
When both target the same open file concurrently, the loop blocks on the
fh lock while the lock holder blocks on the loop: an ABBA deadlock that
backs up every later readdir/flush and hangs the mount.

Fix: dispatch entry invalidations to a dedicated FIFO worker goroutine so
the apply loop never blocks on locks held by goroutines waiting on it.
Adds a regression test reproducing the interleaving.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* perf(mount): update invalidate counter once per batch

Run the batch's invalidateFunc calls without re-taking invalidateMu per
item, then bump invalidateProcessed and broadcast once after the loop.
WaitForEntryInvalidations only needs the count to reach its target and a
batch always completes together, so the per-item lock + broadcast was
wasted work.

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>

* mount: extract the invalidate worker into util.AsyncBatchWorker

The apply loop's off-thread entry-invalidation queue was a one-off mutex +
cond + slice + counters living inside MetaCache. Pull it out as a generic
unbounded FIFO worker so the deadlock-avoidance contract (never block the
producer, drain on shutdown, wait-for-quiesce) lives in one place.

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-06-19 09:19:35 -07:00
Jaehoon KimandChris Lu 202517c02a fix(filer.backup): skip replay events whose source chunk was superseded or deleted (#9886)
* fix(filer.backup): skip replay events whose chunk no longer exists on the source

"Source" is the filer we replicate FROM (e.g. green in a green->blue backup).

Replaying the metadata log from a checkpoint can hit an event whose chunk was
since overwritten/deleted and garbage-collected on the source volume. Fetching
it returns 0 bytes (a permanent size mismatch), which the sink propagated to the
subscription — so the same offset retried forever and replication stalled.

Skip the event only when proven stale; otherwise keep refusing so genuine loss
of a live file still halts loudly:

- onCorruptChunk centralizes the three errChunkSizeMismatch sites.
- getEntryMtimeNs compares mtime at nanosecond precision so same-second rewrites
  (git's config.lock dance) are ordered correctly.
- sourceSupersedes re-reads the entry's current state on the source: gone
  (ErrNotFound) or a strictly-newer mtime than the replayed version -> skip;
  any other lookup error keeps the entry.

Skipping is lossless: events are full-entry snapshots, so a later event
re-carries the current chunks and a delete event reconciles a removed file.

* test(filer.backup): cover the superseded-chunk skip decision

- TestSourceSupersedes: not-found (sentinel / wrapped / gRPC string) and nil
  entry -> skip; network error -> keep; source newer -> skip; same/older -> keep.
- TestGetEntryMtimeNs: nanosecond precision, same-second ordering, nil safety.
- TestOnCorruptChunkRefusesWhenSupersessionUnconfirmed: never skip silently when
  supersession cannot be confirmed.

* fix(filer.backup): don't infer supersession for incremental sinks

In incremental mode the sink key carries a date prefix
(sinkDir/YYYY-MM-DD/relPath) that cannot be reversed to a real source path, so a
source lookup would always be ErrNotFound and wrongly classify a live entry as
deleted — skipping it. Make targetPathToSourcePath report "unmappable" in
incremental mode; hasSourceNewerVersion already declines to skip when the source
path cannot be mapped.

Found in code review. Non-incremental sinks (filer.backup green->blue) are
unaffected.

* refactor(filer.backup): name the mtime param sourceMtimeNs; note ns overflow bound

- Rename the threaded sourceMtime parameter to sourceMtimeNs across the internal
  replicate/fetch helpers so the unit is explicit (it only feeds
  hasSourceNewerVersion, which compares in nanoseconds).
- Document that getEntryMtimeNs's int64 ns arithmetic is safe until ~year 2262.

No behavior change.

* fix(filer.backup): order same-second versions in the CreateEntry skip and update gates

The CreateEntry already-replicated short-circuit and chooseUpdateAction
still compared second-grained mtime, so a newer version written within
the same second could be skipped as already-replicated or overwritten by
an older same-second replay. Route both through getEntryMtimeNs, matching
the precision the chunk-replication path already uses.

* test(filer.backup): cover same-second update-action ordering

* docs(filer.backup): trim verbose comments to terse why

* fix(filer.backup): check supersession against the rename's new path

For a rename the filer sink updates in place (the delete+create branch is
skipped for sink name "filer"), so the corrupt-chunk supersession check
queried the pre-rename key. Its source-side ErrNotFound was read as
"superseded", silently advancing the checkpoint without applying the rename.
Map the incoming entry's new path (newParentPath/newEntry.Name) for both
update branches.

* fix(filer.backup): detect a deleted source even when the replayed mtime is epoch

hasSourceNewerVersion returned early when sourceMtimeNs <= 0, skipping the
source lookup, so a deleted entry with mtime 0 (a valid epoch timestamp) never
got the gone verdict and wedged on permanent retries. Always look up; gate only
the newer-mtime comparison on a valid replayed mtime.

---------

Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-06-09 08:53:29 -07:00
1b5f1c1f3b feat(filer.backup): -initialSnapshot re-seeds a reinitialized destination (#9828)
* feat(filer.backup): add -resetCheckpoint to force a fresh sync

filer.backup resumes from a per-sink offset persisted in the source filer's KV.
There was no first-class way to discard that checkpoint and re-run from the
beginning short of guessing a large -timeAgo, which also skips -initialSnapshot.

Add -resetCheckpoint: before reading the offset, write 0 for this sink so
getOffset returns 0, isFreshSync stays true, and -initialSnapshot re-runs a full
walk. Effective only when -timeAgo is 0.

The flag is cleared after the first successful reset: runFilerBackup retries
doFilerBackup forever on error, so leaving it set would re-zero the checkpoint
on every retry and never make forward progress after a transient failure. Later
retries resume from the persisted checkpoint instead.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* fix(filer.backup): keep fresh-sync intent when offset read fails after reset

After -resetCheckpoint writes offset 0, a transient getOffset read-back error
flipped isFreshSync to false, which skipped the -initialSnapshot walk the reset
explicitly requested. Track that the reset happened this iteration and, on a
getOffset error, preserve isFreshSync=true in that case (the non-reset path
keeps treating a read error as "not fresh" to avoid re-walking on transients).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* refactor(filer.backup): skip offset read-back on reset instead of tracking a flag

Replace the didReset bool by branching: on -resetCheckpoint, clear the offset and
start fresh without reading it back (we just wrote 0, so the state is known);
otherwise read the offset as before. This drops the redundant getOffset RPC after
a reset and removes the read-back error case entirely, so no separate flag is
needed to preserve isFreshSync.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

* filer.backup: -initialSnapshot re-seeds on every start; drop -resetCheckpoint

-initialSnapshot now walks the live tree whenever -timeAgo is 0, seeds the
destination, and overwrites the saved checkpoint, rather than running only on a
fresh sync. That re-seeds a reinitialized destination on its own, so the
separate -resetCheckpoint flag is gone.

The walk runs once per process: the in-memory flag is cleared after the
watermark is persisted, so the retry loop resumes from the persisted checkpoint
instead of re-walking on every transient error. A process restart re-walks, so
remove the flag once the backup is caught up.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-06-07 23:35:53 -07:00
Jaehoon KimandChris Lu 4b23204023 fix(vacuum): writable volume re-notification after worker VACUUM (#9732)
* fix(vacuum): notify master writable after worker vacuum commit

Add Phase 3 (markWritableOne) that walks vacuumTargets and calls
VolumeMarkWritable on each replica's volume server, mirroring
batchVacuumVolumeCommit's per-replica SetVolumeAvailable. Failures are
logged at WARN; the task does not fail because the vacuum itself
already succeeded. See upstream seaweedfs#9685.

* fix(vacuum): delay Phase 3 to let post-commit heartbeats settle

Phase 3's VolumeMarkWritable can race with the volume server's first
post-commit heartbeat. SetVolumeWritable adds the vid to writables,
but a racing heartbeat whose ReadOnly value changed re-runs
EnsureCorrectWritables against the master's per-replica cache, and any
replica still cached as ReadOnly=true silently removes the vid again
— with no further heartbeat change to trigger another recovery.

Sleep 30s after Phase 2 (Commit) so every replica's post-vacuum
heartbeat has reached the master before Phase 3 fires. Cancel cleanly
on ctx.Done so a shutdown during the wait still exits.

* fix(vacuum): reduce post-commit settle from 30s to 10s

VolumePulsePeriod is 5s, so 10s (2x) is enough margin for every
replica's post-commit heartbeat to reach the master before Phase 3
fires. 30s was overly conservative and made TestVacuumExecutionIntegration
hit its 30s context deadline.

* fix(vacuum): use flat 1m timeout for VolumeMarkWritable RPC

VolumeMarkWritable on the volume server is a metadata operation
(reopen idx + flags + master ReadOnly=false heartbeat), independent
of volume size. Scaling via vacuumTimeout(time.Minute) gave it tens
of minutes — even hours on TB volumes — so a single unresponsive
replica could block Phase 3 indefinitely. Use a flat 1m cap.

* fix(vacuum): gate post-vacuum mark-writable on commit read-only state

Phase 3 force-called VolumeMarkWritable on every replica unconditionally,
clearing the read-only flag and persisting ReadOnly=false even for a
replica left read-only by an operator, an EIO quarantine, or low disk.
That overrode states the master deliberately keeps out of writables;
master built-in vacuum gates the same step on the commit's IsReadOnly via
SetVolumeAvailable.

Capture the VacuumVolumeCommit response and skip Phase 3 when any replica
came back read-only, letting it recover on its own ReadOnly=false
heartbeat. Drop the 10s post-commit settle sleep: the heartbeat race it
guarded needed a replica cached read-only at the master, which the gate
now excludes.

---------

Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-05-29 23:43:24 -07:00
Jaehoon Kim d00acded8a fix(vacuum): batch all replicas in a single plugin worker task (#9702)
* fix(vacuum): batch all replicas in a single plugin worker task

The plugin worker vacuum path emitted one TaskDetectionResult per
(volume, server) replica, but the dispatcher gates duplicate tasks per
volume via ActiveTopology.HasAnyTask. The first replica's task was
created and the remaining N-1 replicas were silently dropped, so only
one replica per volume was ever vacuumed — leaving the others with all
their garbage intact.

Mirror the master built-in flow (topology.vacuumOneVolumeId →
batchVacuumVolumeCheck/Compact/Commit/Cleanup) by:

- aggregating detection metrics by VolumeID so a single task carries
  every replica in TaskParams.Sources
- having VacuumTask accept []string servers (instead of a single
  string), re-check each replica's garbage ratio at execute time to
  derive a vacuumTargets subset, and run Compact/Commit/Cleanup against
  only that subset
- updating the dispatcher (plugin_handler.Execute, register.CreateTask)
  to forward every Sources node to NewVacuumTask

* fix(vacuum): run all-replica vacuum in two phases to keep failure atomic

The prior implementation iterated Compact → Commit → Cleanup against
each replica in sequence. A Compact failure on the second replica left
the first one already committed (its active files swapped with the
.cp* files), producing replica divergence with no automatic recovery.

Split performVacuum into two phases, matching topology.vacuumOneVolumeId:

  Phase 1 — Compact all targets. If any fails, run VacuumVolumeCleanup
  on every target to drop the .cpd/.cpx/.cpldb temp files, then abort.
  No replica has swapped yet, so every replica returns to its original
  state.

  Phase 2 — Commit all targets. Best-effort, matching
  batchVacuumVolumeCommit: per-replica errors are collected and
  surfaced together. Once any replica has swapped there is no clean
  rollback, so a partial Phase 2 failure requires operator
  reconciliation.

Adds compactOne / commitOne / cleanupOne / cleanupAll helpers and
removes the old performVacuumOne.

* fix(vacuum): abort when any replica's garbage check fails

The prior check tolerated per-replica RPC errors and only failed the
task if every replica errored — partial failures were silently treated
as "ineligible" so the responding replicas would still be vacuumed.
That produces divergence the moment the unreachable replica comes
back: it still carries the original garbage while the others have
been compacted.

Match topology.batchVacuumVolumeCheck's contract instead — its return
value (errCount == 0 && len(vacuumLocationList.list) > 0) gates the
whole vacuum on every replica's check succeeding. If any replica is
unreachable or its VacuumVolumeCheck RPC errors, abort the task; the
volume will be retried on the next detection cycle once the replica
is healthy.

* fix(vacuum): guard against nil metrics and TaskSource entries

Detection's bucket-building loop dereferenced m.VolumeID without
checking m for nil. VacuumTask.Validate built sourceSet from
params.Sources without checking each entry for nil. Both paths would
panic on a malformed protobuf payload that managed to deliver a nil
slot. Skip nil entries in both loops — neutral with the existing
nil/empty filtering already done in register.CreateTask and
plugin_handler.Execute.

* test(vacuum): success path no longer calls VacuumVolumeCleanup

The plugin worker vacuum is now two-phase (Compact-all → Commit-all,
with Cleanup only invoked on Compact failure to roll back .cp* temp
files). This matches topology.vacuumOneVolumeId, where
batchVacuumVolumeCleanup runs only on the Compact-failure branch.

On a successful Commit the temp files do not linger:
  - CommitCompactVolume renames .cpd → .dat and .cpx → .idx
  - leveldb needle map renames .cpldb → .ldb (needle_map_leveldb.go)

so calling VacuumVolumeCleanup afterwards is a redundant no-op. The
prior worker code called it unconditionally and the integration test
asserted that — switch the expectation to cleanupCalls == 0 to
document the new (and master-aligned) contract.
2026-05-27 11:15:25 -07:00
675020b342 fix(filer.sync): validate chunk size in FilerSink to prevent 0-byte propagation (#9701)
* fix(filer.sync): validate chunk size in FilerSink to prevent 0-byte propagation

FilerSink.fetchAndWrite previously trusted the source response and the
upload result blindly: a 200 OK / Content-Length: 0 reply from a broken
source volume was happily uploaded as a 0-byte needle to the destination,
and the destination filer metadata was then written with the source
chunk size. The result was permanent silent corruption -- ls shows the
file at its original size but reads fail with EIO.

Add two cheap defenses inside fetchAndWrite:

  1. After assembling fullData, compare its length against sourceChunk.Size.
  2. After a successful upload, compare uploadResult.Size against
     sourceChunk.Size.

Both checks wrap a new sentinel errChunkSizeMismatch that the retry
callback recognizes and refuses to retry -- needle.size=0 on disk is a
persistent state, not a transient network error, so the sync should stop
loudly on the affected entry instead of looping or, worse, silently
propagating it.

Tests:

  * TestValidateReplicatedChunkSize -- table-driven coverage of healthy,
    legitimately empty, zero-byte read, short read, and truncated upload
    cases.
  * TestFetchAndWriteRejectsZeroByteSource -- end-to-end: an httptest
    source that returns 200 OK with an empty body must cause fetchAndWrite
    to return errChunkSizeMismatch after exactly one source hit (fail
    fast, no retry storm).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

* filer.sync: bubble size-mismatch past CreateEntry/UpdateEntry

Three follow-ups on the chunk-size validation:

- Use %w in replicateOneChunk so the errChunkSizeMismatch sentinel
  survives the wrap and reaches errors.Is callers up the stack.
- In FilerSink.CreateEntry/UpdateEntry, surface errChunkSizeMismatch
  instead of warning-and-nil. Other errors (deleted source chunk,
  transient network) keep the existing swallow so a hiccup doesn't
  stall the stream.
- Drop validateReplicatedUploadSize: uploadResult.Size is set
  client-side from the same len(fullData) we already validated
  pre-upload, so the second check can't fail.

Test: scope the RetryWaitTime override to the one test that needs it,
add a regression that locks in the errors.Is chain through
replicateChunks.

---------

Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-05-26 20:47:53 -07:00
Jaehoon KimandChris Lu be451d22b5 feat(filer.sync): add -verifySync mode to filer.sync for cross-cluster file comparison (#9284)
* Add -verifySync flag to filer.sync for cross-cluster file comparison

Add a verification mode to filer.sync that compares entries between two
filers without performing actual synchronization. Uses directory-level
sorted merge of ListEntries to detect missing files, size mismatches,
and ETag mismatches. Supports -isActivePassive for unidirectional check
and -modifyTimeAgo to skip recently modified files during sync lag.

* Add mtime annotation and JSON output to filer.sync -verifySync

Add automatic mtime relation analysis for SIZE_MISMATCH and
ETAG_MISMATCH diffs, and an NDJSON output mode for external tooling.

mtime classification:
- B_NEWER => "late_updates_skip_likely" hint. Surfaces the case
  where target has a stub entry whose mtime is ahead of source's
  real file, causing UpdateEntry's mtime guard in filersink to
  permanently skip the update.
- A_NEWER => "sync_lag_or_event_miss" hint.
- EQUAL   => no hint (chunk-level issue suspected).

Text output example:
  [SIZE_MISMATCH] /path (a=996, b=0, B newer +274d [late-updates skip likely])

Add -verifyJsonOutput flag. When set, emits one JSON object per
line (NDJSON) for diffs and a final SUMMARY object, suitable for
piping into external diagnostic pipelines.

Concurrent writes from the directory worker pool are now serialized
via outputMu to keep both text lines and JSON records atomic.

* fix(filer.sync): use shared global semaphore in verifySync to bound goroutine explosion

Replace the per-call local semaphore in compareDirectory with a single
shared semaphore created in runVerifySync. The old per-level semaphore
applied a limit of verifySyncConcurrency only within each directory level,
allowing effective concurrency to grow as verifySyncConcurrency^depth on
deep trees.

The shared semaphore is held only for each directory's I/O phase
(listEntries + merge) and released before recursing into subdirectories,
so a parent never blocks waiting for children to acquire slots — which
would deadlock once tree depth exceeds the semaphore capacity.

Extract the capacity into a named constant (verifySyncConcurrency = 5)
with a comment explaining the memory vs. performance trade-off.

Add unit tests:
- correctness: missing file, only-in-B, size mismatch, active-passive mode
- concurrency bound: peak concurrent listings ≤ verifySyncConcurrency
- no-deadlock: binary tree of depth 10 completes within timeout

* fix(filer.sync): stream directory entries to prevent OOM on large directories

Replace the listEntries helper (which accumulated all entries into a
single []filer_pb.Entry slice) with an entryStream type that pages
through the directory in the background and forwards entries one at a
time through a buffered channel. Memory per directory comparison is now
O(channel buffer size = 64) regardless of how many entries the directory
contains.

Key design points:
- entryStream wraps a goroutine + buffered channel with a one-entry
  lookahead (peek/advance) so the two-pointer sorted merge in
  compareDirectory can work without buffering any full listing.
- A child context (mergeCtx) is passed to both stream goroutines so
  they are cancelled promptly if compareDirectory returns early (e.g.
  on error); the ctx.Done() select arm in the callback prevents
  goroutine leaks when the consumer stops reading.
- stream.err is written by the goroutine before close(ch), so it is
  safe to read after the channel is exhausted (Go memory model:
  channel close happens-before the zero-value receive).
- countMissingRecursive is rewritten to use ReadDirAllEntries with a
  direct callback, eliminating its own slice allocation.
- listEntries is removed; it is no longer called anywhere.

* fix(filer.sync): address verifySync review findings

Four real bugs found and fixed; one finding already resolved (shared
semaphore was introduced in a prior commit).

path.Join for child paths (filer_sync_verify.go)
  fmt.Sprintf("%s/%s", dir, name) produced "//name" when dir was "/".
  Replace all child-path concatenations with path.Join so root-level
  walks emit clean paths.

cutoffTime check for ONLY_IN_B entries (filer_sync_verify.go)
  The B-only branch ignored -modifyTimeAgo, so files recently written
  to B were reported as ONLY_IN_B instead of being skipped. Mirror the
  A-side mtime guard: skip and increment skippedRecent when the entry
  is newer than cutoffTime.

Summary emitted before error check (filer_sync_verify.go)
  A filer I/O error mid-walk still caused a SUMMARY record (or text
  summary) to be printed, making partial runs appear complete. Move the
  error check to before summary emission; on error, return immediately
  without printing any summary.

Return false on verification failure (filer_sync.go)
  runVerifySync returned true (exit 0) even when diffs were found or the
  walk failed. Return false so the main binary sets exit status 1,
  consistent with how all other commands signal failure.

* test(filer.sync): add missing verifySync test coverage

Four new tests covering gaps identified during review:

TestVerifySyncETagMismatch
  Verifies that two files with identical size but different Md5 checksums
  are counted as etagMismatch (not sizeMismatch). Exercises the second
  branch of compareEntries that was previously untested.

TestVerifySyncCutoffTime (4 subtests)
  A-only recent  — recent file skipped (skippedRecent++), not MISSING
  A-only old     — old file reported as MISSING
  B-only recent  — recent file skipped (skippedRecent++), not ONLY_IN_B
  B-only old     — old file reported as ONLY_IN_B
  The B-only subtests specifically cover the cutoffTime fix added in the
  previous commit.

TestVerifySyncRootPath
  Regression for the path.Join fix: walks from "/" and verifies that the
  child directory is reached and compared correctly (the old Sprintf
  produced "//data" which would silently produce wrong results).
  Asserts dirCount=2 and fileCount=1 to confirm the full tree is walked.

* fix(filer.sync): use os.Exit(2) instead of return false on verify failure

return false triggered weed.go's error handler which printed the full
command usage — appropriate for invalid arguments, not for a completed
verification that found differences. Use os.Exit(2) consistent with
the existing pattern in filer_sync.go (lines 251, 293).

* refactor(filer.sync.verify): split verify into its own command

The verify mode is a one-shot batch operation with a fundamentally
different lifecycle from the long-running sync subscriber, and most of
filer.sync's flags (replication, metrics port, debug pprof, concurrency,
etc.) do not apply to it. Extract it into a sibling command alongside
filer.copy/filer.backup/filer.export rather than a flag mode on
filer.sync.

Also rename modifyTimeAgo to modifiedTimeAgo (grammatical) and drop the
verifyJsonOutput prefix to plain jsonOutput now that the verify context
is implicit in the command name.

* fix(filer.sync.verify): address review comments

- Bounded worker pool: cap subdirectory goroutines per level via a
  jobs channel and min(verifySyncConcurrency, len(subDirs)) workers
  instead of spawning one goroutine per child. Wide directories no
  longer park ~2KB per queued goroutine.

- Don't gate recursion on a directory's mtime: a fresh child write
  bumps the parent mtime, but older files inside should still be
  reported as missing. Always recurse for missing-in-B directories
  and apply the cutoff per-file inside countMissingRecursive.

- Apply -modifiedTimeAgo symmetrically: matched-name files now skip
  the comparison when EITHER side is recently modified, not just A.
  This restores lag tolerance when B was just rewritten.

Adds tests for both new behaviors and a shared isTooRecent helper.

---------

Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-04-29 12:33:53 -07:00
Jaehoon KimandChris Lu 96af27a131 feat(shell): add fs.distributeChunks command for even chunk distribution (#9117)
* feat(shell): add fs.distributeChunks command for even chunk distribution

Add a new weed shell command that redistributes a file's chunks evenly
across volume server nodes.

Supports three distribution modes via -mode flag:
- primary:     balance chunk ownership across nodes (default)
- replica:     balance both ownership and replica copies
- round-robin: assign chunks by offset order for sequential read
               optimization (chunk[0]->A, chunk[1]->B, chunk[2]->C, ...)

Additional options:
- -nodes=N to target specific number of nodes
- -apply to execute (dry-run by default)

Usage:
  fs.distributeChunks -path=/buckets/file.dat
  fs.distributeChunks -path=/buckets/file.dat -mode=round-robin -apply
  fs.distributeChunks -path=/buckets/file.dat -mode=replica -apply
  fs.distributeChunks -path=/buckets/file.dat -nodes=5 -apply

* fix(shell): improve fs.distributeChunks robustness and code quality

- Propagate flag parse errors instead of swallowing them (return err)
- Handle nil chunk.Fid by falling back to legacy FileId string parsing
- Simplify node membership check using slices.Contains

* fix(shell): fix dead round-robin print loop in fs.distributeChunks

The loop was computing targetNode with sc.index%totalNodes (original
chunk index) instead of the sequential position, and discarding it via
_ = targetNode without printing anything. Replace with a correct loop
using pos%totalNodes and actually print the first 12 node assignments.

* fix(shell): compute replication/collection per-chunk in fs.distributeChunks

Previously replication and collection were derived once from chunks[0]
and reused for all moves, causing wrong volume placement for chunks
belonging to different volumes or collections. Now each chunk looks up
its own volumeInfoMap entry immediately before calling operation.Assign.

* fix(shell): prefer assignResult.Auth JWT over local signing key in fs.distributeChunks

When the master returns an Auth token in the Assign response, use it
directly for the upload instead of generating a new JWT from the local
viper signing key. Fall back to local key generation only when Auth is
empty, matching the pattern used by other upload paths.

* fix(shell): add timeout and error handling to delete requests in fs.distributeChunks

The delete loop was ignoring http.NewRequest errors and had no timeout,
risking a nil-request panic or indefinite block. Replace with
http.NewRequestWithContext and a 30s timeout, handle request creation
errors by incrementing deleteFailCount, and cancel the context
immediately after Do returns.

* feat(shell): parallelize chunk moves in fs.distributeChunks using ErrorWaitGroup

Sequential chunk moves are a bottleneck for large LLM model files with
hundreds or thousands of chunks. Use ErrorWaitGroup with
DefaultMaxParallelization (10) to run download/assign/upload concurrently.
Guard movedRecords appends, chunk.Fid updates, and writer output with a
mutex. Individual chunk failures are non-fatal and logged inline; only
successfully moved chunks are included in the metadata update.

* fix(shell): try all replica URLs on download in fs.distributeChunks

Previously only the first volume server URL was attempted, causing chunk
moves to fail if that replica was unreachable. Now iterates through all
URLs returned by LookupVolumeServerUrl and stops at the first success.

* refactor(shell): apply extract method pattern to fs.distributeChunks

Do() was a single ~615-line function. Break it into focused helpers:
- lookupFileEntry: filer entry lookup
- validateChunks: chunk manifest guard
- collectVolumeTopology: master topology query + ownership mapping
- buildDistributionCounts: chunk→node mapping and owner/copy tallies
- selectActiveNodes: target node selection
- printCurrentDistribution: per-node distribution table
- planDistribution: mode-switch planning (primary/replica/round-robin)
- printRedistributionPlan: before/after plan table
- relevantNodes: active-or-occupied node filter

Do() is now ~100 lines of orchestration; each helper has a single
clear responsibility.

* test(shell): add unit tests for fs.distributeChunks algorithms

Cover all three distribution modes and supporting helpers:
- shortName, relevantNodes
- computeOwnerTarget (even/uneven split, inactive node drain)
- buildDistributionCounts (normal + nil Fid fallback)
- selectActiveNodes (all nodes / limited count)
- planOwnerMoves (imbalanced → balanced, already balanced)
- planDistribution primary (chunks balanced, no-op when even)
- planDistribution round-robin (offset ordering, correct assignment)
- planDistribution replica (owner + copy balancing)
- printRedistributionPlan (output format)

* fix(shell): add 5-minute timeout to chunk downloads in fs.distributeChunks

Download requests had no per-request timeout, unlike delete operations
which already use 30s. Replace readUrl() calls with inline
http.NewRequestWithContext + context.WithTimeout(5m) so a hung volume
server cannot block a goroutine indefinitely during redistribution.

* fix(shell): remove redundant deleteOldChunks in fs.distributeChunks

filer.UpdateEntry already calls deleteChunksIfNotNew internally, which
computes the diff between old and new entry chunks and deletes the ones
no longer referenced. Our explicit deleteOldChunks was racing with this
filer-side cleanup, causing spurious 404 warnings on ~75% of deletes.

Remove deleteOldChunks, movedChunkRecord type, and reduce
executeChunkMoves return type to (int, error) for the moved count.

* fix(shell): handle nil chunk.Fid via chunkVolumeId helper in fs.distributeChunks

chunk.Fid.GetVolumeId() silently returns 0 for legacy chunks stored with
a FileId string instead of a Fid struct, causing them to be skipped in
the replica balancing loop and looked up incorrectly in volumeInfoMap.

Introduce chunkVolumeId() that uses Fid when present and falls back to
parsing the legacy FileId string, matching the logic in
buildDistributionCounts. Apply it in the replica-mode copies loop and
in executeChunkMoves' replication/collection lookup.

* fix(shell): use already-parsed oldFid for volumeInfoMap lookup in fs.distributeChunks

chunkVolumeId(chunk) was being called to look up replication/collection
after oldFid had already been parsed and validated. Use oldFid.VolumeId
directly to avoid redundant parsing and guarantee the correct volume ID
regardless of whether chunk.Fid is nil.

* fix(shell): improve correctness and robustness in fs.distributeChunks

- Buffer download body before upload so dlCtx timeout only covers the
  GET request; upload runs with context.Background() via bytes.NewReader
- Replace 'before, after := strings.Cut(...)' + '_ = before' with '_'
  as the first return value directly
- Clone copiesCount before replica planner mutates it, keeping the
  caller's map immutable
- Add nil-entry guard after filer LookupEntry to prevent panic on
  unexpected nil response

* feat(shell): support chunk manifests in fs.distributeChunks

Large files stored as chunk manifests were previously rejected. Resolve
manifests up front via filer.ResolveChunkManifest, redistribute the
underlying data chunks, then re-pack through filer.MaybeManifestize
before UpdateEntry. The filer's MinusChunks resolves manifests on both
sides of the diff, so old manifest and inner data chunks are GC'd
automatically.

* fix(shell): match master's SaveDataAsChunkFunctionType 5-param signature

Master added expectedDataSize uint64; ignore it in shell-side saveAsChunk.

---------

Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-04-17 21:09:36 -07:00
Jaehoon Kim d3cea714d0 fix(filer.backup): local sink readonly permission (#8907) 2026-04-03 05:36:56 -07:00
6cf34f2376 Add -filerExcludePathPattern flag and fix nil panic in -filerExcludeFileName (#8756)
* Fix filerExcludeFileName to support directory names and path components

The original implementation only matched excludeFileName against
message.NewEntry.Name, which caused two issues:

1. Nil pointer panic on delete events (NewEntry is nil)
2. Files inside excluded directories were still backed up because
   the parent directory name was not checked

This patch:
- Checks all path components in resp.Directory against the regexp
- Adds nil guard for message.NewEntry before accessing .Name
- Also checks message.OldEntry.Name for rename/delete events

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Add -filerExcludePathPattern flag and fix nil panic in filerExcludeFileName

Separate concerns between two exclude mechanisms:
- filerExcludeFileName: matches entry name only (leaf node)
- filerExcludePathPattern (NEW): matches any path component via regexp,
  so files inside matched directories are also excluded

Also fixes nil pointer panic when filerExcludeFileName encounters
delete events where NewEntry is nil.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Refactor exclude logic: per-side exclusion for rename events, reduce duplication

- Extract isEntryExcluded() to compute exclusion per old/new side,
  so rename events crossing an exclude boundary are handled as
  delete + create instead of being entirely skipped
- Extract compileExcludePattern() to deduplicate regexp compilation
- Replace strings.Split with allocation-free pathContainsMatch()
- Check message.NewParentPath (not just resp.Directory) for new side

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Move regexp compilation out of retry loop to fail fast on config errors

compileExcludePattern for -filerExcludeFileName and -filerExcludePathPattern
are configuration-time validations that will never succeed on retry.
Move them to runFilerBackup before the reconnect loop and use glog.Fatalf
on failure, so invalid patterns are caught immediately at startup instead
of being retried every 1.7 seconds indefinitely.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

* Add wildcard matching helpers for path and filename exclusion

* Replace regexp exclude patterns with wildcard-based flags, deprecate -filerExcludeFileName

Add -filerExcludeFileNames and -filerExcludePathPatterns flags that accept
comma-separated wildcard patterns (*, ?) using the existing wildcard library.
Mark -filerExcludeFileName as deprecated but keep its regexp behavior.

---------

Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-03-26 10:04:06 -07:00
Jaehoon KimandChris Lu f2e7af257d Fix volume.fsck -forcePurging -reallyDeleteFromVolume to fail fast on filer traversal errors (#8015)
* Add TraverseBfsWithContext and fix race conditions in error handling

- Add TraverseBfsWithContext function to support context cancellation
- Fix race condition in doTraverseBfsAndSaving using atomic.Bool and sync.Once
- Improve error handling with fail-fast behavior and proper error propagation
- Update command_volume_fsck to use error-returning saveFn callback
- Enhance error messages in readFilerFileIdFile with detailed context

* refactoring

* fix error format

* atomic

* filer_pb: make enqueue return void

* shell: simplify fs.meta.save error handling

* filer_pb: handle enqueue return value

* Revert "atomic"

This reverts commit 712648bc35.

* shell: refine fs.meta.save logic

---------

Co-authored-by: Chris Lu <chris.lu@gmail.com>
2026-01-14 21:37:50 -08:00
Jaehoon Kim d22e3d3495 Fix uncleanable orphans issue with volume.fsck -forcePurging (#7332)
- Modified `needle_map_memory.go` to include needles with size=0 during needle map loading
- Updated `volume_write.go` to handle size=0 needles in delete operations
2025-10-16 12:21:51 -07:00